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Comment: Comment: Deep Sequencing vs Shallow Sequencing but repeated several times
12 weeks ago by d-cameron ★ 2.9k
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341
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Answer: Answer: I want to add a human gene sequence to a mouse reference genome
4 months ago by d-cameron ★ 2.9k
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816
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Comment: Comment: How to whole genome assemble when I have three references
4 months ago by d-cameron ★ 2.9k
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816
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Comment: Comment: How to whole genome assemble when I have three references
4 months ago by d-cameron ★ 2.9k
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0
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816
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Comment: Comment: How to whole genome assemble when I have three references
4 months ago by d-cameron ★ 2.9k
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1
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816
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Comment: Comment: How to whole genome assemble when I have three references
4 months ago by d-cameron ★ 2.9k
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498
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Answer: Answer: How to find positions with higher depth relative to their surroundings
7 months ago by d-cameron ★ 2.9k
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942
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Answer: Answer: Importance of Data Structures for Bioinformatics?
7 months ago by d-cameron ★ 2.9k
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1.6k
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Answer: Answer: Converting custom VCF to standard VCF
8 months ago by d-cameron ★ 2.9k
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0
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718
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Answer: Answer: CNV benchmarking
8 months ago by d-cameron ★ 2.9k
3
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1
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4.2k
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Answer: Answer: Is there a file format better suited for the era of pangenomics than the .vcf? W
11 months ago by d-cameron ★ 2.9k
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449
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Answer: Answer: unmapped reads
12 months ago by d-cameron ★ 2.9k
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1.2k
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Answer: Answer: samtools index: Numerical result out of range for both .bai and .csi
17 months ago by d-cameron ★ 2.9k
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1.6k
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Comment: Comment: paired end mapping with one end being unique and the other end multiple
19 months ago by d-cameron ★ 2.9k
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1
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1.7k
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Comment: Comment: Unaligned Reads From Bowtie2
19 months ago by d-cameron ★ 2.9k
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1.7k
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Answer: Answer: Unaligned Reads From Bowtie2
19 months ago by d-cameron ★ 2.9k
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1.5k
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Comment: Comment: Extracting only soft/hard clipped reads from a bam file
19 months ago by d-cameron ★ 2.9k
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1
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1.5k
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Answer: Answer: Extracting only soft/hard clipped reads from a bam file
19 months ago by d-cameron ★ 2.9k
3
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1.3k
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Answer: Answer: VCF to human friendly form?
20 months ago by d-cameron ★ 2.9k
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1
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680
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Answer: Answer: Sampling short reads from a library with long reads
20 months ago by d-cameron ★ 2.9k
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0
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949
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Comment: Comment: SV with identical start and end positions
20 months ago by d-cameron ★ 2.9k
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0
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949
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Answer: Answer: SV with identical start and end positions
20 months ago by d-cameron ★ 2.9k
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2
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949
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Comment: Comment: SV with identical start and end positions
21 months ago by d-cameron ★ 2.9k
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761
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Answer: Answer: PC for bioinformatics
21 months ago by d-cameron ★ 2.9k
1
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1
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842
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Answer: Answer: Distinguishing records for reads in a pair in a SAM file
21 months ago by d-cameron ★ 2.9k
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1
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2.2k
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Comment: Comment: AF = 0.5 in chrX, VCF of a male
21 months ago by d-cameron ★ 2.9k
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1
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1.4k
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Answer: Answer: Circos plot from SV data of WES samples
21 months ago by d-cameron ★ 2.9k
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1
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2.6k
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Comment: Comment: Tabix '[E::get_intv] Failed to parse TBX_VCF' error
21 months ago by d-cameron ★ 2.9k
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0
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1.1k
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Answer: Answer: How to extract fasta subsequences from a multiline fasta file which has very lon
22 months ago by d-cameron ★ 2.9k
1
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0
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646
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Answer: Answer: What are the biggest sets of individual-level sequence-based variant data?
22 months ago by d-cameron ★ 2.9k
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0
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813
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Answer: Answer: Is it possible to infer whether a patient is with homozygous with the alternativ
23 months ago by d-cameron ★ 2.9k
2
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1
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761
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Answer: Answer: Unreasonable allele frequency (AF) found in my sample VCF file
23 months ago by d-cameron ★ 2.9k
0
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0
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426
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Comment: Comment: How to bin how many alignments a read maps
23 months ago by d-cameron ★ 2.9k
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0
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1.5k
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Answer: Answer: computing chromothripsis on cancer genomes
24 months ago by d-cameron ★ 2.9k
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0
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447
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Comment: Comment: Detect a sequence without assembling... and counting number of reads?
24 months ago by d-cameron ★ 2.9k
3
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2
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1.6k
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Comment: Comment: paired end mapping with one end being unique and the other end multiple
2.0 years ago by d-cameron ★ 2.9k
2
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0
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1.6k
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Comment: Comment: paired end mapping with one end being unique and the other end multiple
2.0 years ago by d-cameron ★ 2.9k
1
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0
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771
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Comment: Comment: Calling variants after using different read alignment programs
2.1 years ago by d-cameron ★ 2.9k
2
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1
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771
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Answer: Answer: Calling variants after using different read alignment programs
2.1 years ago by d-cameron ★ 2.9k
0
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0
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621
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Answer: Answer: Tumor phylogeny: WGS or deep WES?
2.1 years ago by d-cameron ★ 2.9k
1
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0
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2.1k
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Comment: Comment: Are not all duplicated reads removed when applying removal duplicated algorithms
2.1 years ago by d-cameron ★ 2.9k
1
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1
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2.1k
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Answer: Answer: Are not all duplicated reads removed when applying removal duplicated algorithms
2.2 years ago by d-cameron ★ 2.9k
1
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0
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608
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Answer: Answer: New VCF Header (schema) Parser---Please Break!!!
2.2 years ago by d-cameron ★ 2.9k
2
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0
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1.1k
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Answer: Answer: QUAL in VCF file
2.2 years ago by d-cameron ★ 2.9k
1
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0
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849
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Answer: Answer: Identifying breakpoints of split reads in SAM files
2.2 years ago by d-cameron ★ 2.9k
2
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0
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4.6k
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Comment: Comment: Structural Variants (SV) Manta output interpretation: MantaBND and translocation
2.1 years ago by d-cameron ★ 2.9k
5
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2
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4.6k
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Answer: Answer: Structural Variants (SV) Manta output interpretation: MantaBND and translocation
2.2 years ago by d-cameron ★ 2.9k
4
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1
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1.1k
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What aren't hg19-hg38 liftOver chains symmetrical?
hg38 hg19 liftover
updated 2.4 years ago by ▴ 30 • written 2.5 years ago by ★ 2.9k
1
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1
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917
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Answer: Answer: BAM - number of mapping positions per read
2.5 years ago by d-cameron ★ 2.9k
2
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0
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1.2k
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Answer: Answer: which software is the best to look at clinic structural variation in whole genom
2.6 years ago by d-cameron ★ 2.9k
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