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Answer: Answer: Overlapping Ranges within Granges object
13 days ago by Alex Reynolds 35k
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2
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967
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Answer: Answer: Create a new bed file with all pairwise combinations between two other bed files
4 weeks ago by Alex Reynolds 35k
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348
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Answer: Answer: How to highlight genes on genome visual reprezentation/what tool to use?
6 weeks ago by Alex Reynolds 35k
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383
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Answer: Answer: Error occurs when migrate-n software performs "make mpis"
9 weeks ago by Alex Reynolds 35k
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485
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Answer: Answer: Coverage depth map of genome from multiple sample coverage bedgraphs?
9 weeks ago by Alex Reynolds 35k
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869
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Answer: Answer: Convert Gene symbol to Ensembl ID
10 weeks ago by Alex Reynolds 35k
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0
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508
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Answer: Answer: line 164: 15342 Segmentation fault (core dumped) ${cmd} ${options} - 0<&0
3 months ago by Alex Reynolds 35k
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1
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880
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Answer: Answer: Random Access remote BAM files
3 months ago by Alex Reynolds 35k
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1
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494
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Answer: Answer: Double counts with bedtools intersect?
4 months ago by Alex Reynolds 35k
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1.4k
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Answer: Answer: Some lines are not well organized in BED file, how to correct them ? Thanks a lo
4 months ago by Alex Reynolds 35k
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397
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Answer: Answer: identify genes
4 months ago by Alex Reynolds 35k
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2
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643
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Answer: Answer: Where can I get a list of SNPs mapping overlapping genes in humans?
5 months ago by Alex Reynolds 35k
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0
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838
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Answer: Answer: Filter a BED file based on genome coordinates for gene names
6 months ago by Alex Reynolds 35k
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438
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Answer: Answer: distance between chip peaks and individual TSS
6 months ago by Alex Reynolds 35k
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650
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Answer: Answer: Simple tools for creation of figures of gene and protein structure
6 months ago by Alex Reynolds 35k
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0
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549
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Answer: Answer: Visualize raw rna fastq file and aligned bam file
7 months ago by Alex Reynolds 35k
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0
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1.3k
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Answer: Answer: Getting the overlap between two GTF files
7 months ago by Alex Reynolds 35k
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1
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697
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Answer: Answer: Mapping SNP rsIds/ positions to genes coding for proteins
8 months ago by Alex Reynolds 35k
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786
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Answer: Answer: BED files
8 months ago by Alex Reynolds 35k
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473
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Answer: Answer: Visualize where kmers are on a reference genome
8 months ago by Alex Reynolds 35k
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0
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777
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Answer: Answer: Create 10,000bp windows for a SNP file and assign each SNP to its respective win
8 months ago by Alex Reynolds 35k
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2
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3.9k
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Answer: Answer: Reproduce the article "The complete sequence of a human genome."
9 months ago by Alex Reynolds 35k
3
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2
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1.8k
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Answer: Answer: bedops alternative for bedtools -unionbedg ?
8 months ago by Alex Reynolds 35k
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1.5k
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Answer: Answer: Is Bioinformatics a Professional Degree?
9 months ago by Alex Reynolds 35k
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942
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Answer: Answer: Scanning a genomic region for TFBS
9 months ago by Alex Reynolds 35k
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644
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Answer: Answer: Identify binding motifs within large super enhancer region
10 months ago by Alex Reynolds 35k
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0
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950
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Answer: Answer: BED files
11 months ago by Alex Reynolds 35k
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704
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Answer: Answer: how to intersect multiple bed files and get results in uncollapsed genomic inter
11 months ago by Alex Reynolds 35k
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2
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3.6k
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Answer: Answer: Decoding MM and ML tags in .SAM file
10 months ago by Alex Reynolds 35k
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1
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1.8k
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Answer: Answer: Finding TF motifs enriched in series of ATAC-seq peaks (using fimo?)
12 months ago by Alex Reynolds 35k
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1
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669
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Answer: Answer: Does it possible to know what are the adjacent genes up to 1000bp upstream and
14 months ago by Alex Reynolds 35k
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2.2k
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Answer: Answer: gtf2bed not converting to bed
14 months ago by Alex Reynolds 35k
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0
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614
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Answer: Answer: How do you get functional/biological role of motifs?
16 months ago by Alex Reynolds 35k
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0
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1.0k
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Answer: Answer: Merging and intersecting genomic ranges for an indefinite number of files
17 months ago by Alex Reynolds 35k
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1.0k
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Answer: Answer: Merging and intersecting genomic ranges for an indefinite number of files
17 months ago by Alex Reynolds 35k
2
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1
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955
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Answer: Answer: How can I use nohup command when filtering SNPs?
17 months ago by Alex Reynolds 35k
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0
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1.3k
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Answer: Answer: Bedtools merge but only if intersection exists
18 months ago by Alex Reynolds 35k
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1
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1.7k
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Answer: Answer: How to find overlapping regions in a single bed file
20 months ago by Alex Reynolds 35k
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1
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1.8k
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Answer: Answer: Count regions that overlap with python
22 months ago by Alex Reynolds 35k
2
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0
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2.3k
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Answer: Answer: Best formats for storing large amounts of data for random access
22 months ago by Alex Reynolds 35k
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0
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484
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Answer: Answer: Visualization of trascription factor family grouped by biological function
22 months ago by Alex Reynolds 35k
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0
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2.8k
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Answer: Answer: GFF to BED conversion
23 months ago by Alex Reynolds 35k
2
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1
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1.2k
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Answer: Answer: Mapping chromosome location to gene ID
23 months ago by Alex Reynolds 35k
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0
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835
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Answer: Answer: Comparing bed files for shifts and enlargements
23 months ago by Alex Reynolds 35k
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0
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1.4k
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Answer: Answer: How to create bed file from list of variants with indels and bp values
2.0 years ago by Alex Reynolds 35k
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1
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1.9k
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Answer: Answer: sliding windows over genome
2.0 years ago by Alex Reynolds 35k
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0
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1.0k
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Answer: Answer: "moving average" function for "coverage" signal in bed files?
2.0 years ago by Alex Reynolds 35k
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0
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1.2k
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Answer: Answer: How to interpret similar motifs in Homer results
2.1 years ago by Alex Reynolds 35k
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0
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1.4k
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Answer: Answer: Why the bed file not recognized as a bed file
2.1 years ago by Alex Reynolds 35k
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1
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1.1k
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Answer: Answer: Circos plot
2.1 years ago by Alex Reynolds 35k
1,474 results • Page 1 of 30
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