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251
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Comment: Comment: Bedtools merge minimum overlap?
3 days ago by Alex Reynolds 35k
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1
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674
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Answer: Answer: Create a new bed file with all pairwise combinations between two other bed files
9 days ago by Alex Reynolds 35k
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1
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1.5k
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Comment: Comment: Bioinformatician who was retaliated against after reporting discriminatory haras
21 days ago by Alex Reynolds 35k
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316
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Answer: Answer: How to highlight genes on genome visual reprezentation/what tool to use?
22 days ago by Alex Reynolds 35k
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0
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7.7k
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Comment: Comment: Intersect multiple BED files
5 weeks ago by Alex Reynolds 35k
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1
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453
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Comment: Comment: Coverage depth map of genome from multiple sample coverage bedgraphs?
5 weeks ago by Alex Reynolds 35k
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0
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354
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Answer: Answer: Error occurs when migrate-n software performs "make mpis"
5 weeks ago by Alex Reynolds 35k
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1
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453
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Comment: Comment: Coverage depth map of genome from multiple sample coverage bedgraphs?
6 weeks ago by Alex Reynolds 35k
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1
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453
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Answer: Answer: Coverage depth map of genome from multiple sample coverage bedgraphs?
6 weeks ago by Alex Reynolds 35k
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0
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752
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Answer: Answer: Convert Gene symbol to Ensembl ID
7 weeks ago by Alex Reynolds 35k
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0
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489
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Comment: Comment: Genes with multiple chromosome locations
8 weeks ago by Alex Reynolds 35k
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1
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752
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Comment: Comment: Convert Gene symbol to Ensembl ID
8 weeks ago by Alex Reynolds 35k
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1
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752
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Comment: Comment: Convert Gene symbol to Ensembl ID
9 weeks ago by Alex Reynolds 35k
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0
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18k
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Comment: Comment: BEDOPS gtf2bed conversion error with Ensembl GTF
9 weeks ago by Alex Reynolds 35k
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0
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473
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Comment: Comment: line 164: 15342 Segmentation fault (core dumped) ${cmd} ${options} - 0<&0
11 weeks ago by Alex Reynolds 35k
2
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0
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473
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Answer: Answer: line 164: 15342 Segmentation fault (core dumped) ${cmd} ${options} - 0<&0
11 weeks ago by Alex Reynolds 35k
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0
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684
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Comment: Comment: Random Access remote BAM files
11 weeks ago by Alex Reynolds 35k
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1
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684
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Comment: Comment: Random Access remote BAM files
11 weeks ago by Alex Reynolds 35k
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1
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684
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Comment: Comment: Random Access remote BAM files
11 weeks ago by Alex Reynolds 35k
0
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1
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684
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Answer: Answer: Random Access remote BAM files
11 weeks ago by Alex Reynolds 35k
2
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1
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445
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Answer: Answer: Double counts with bedtools intersect?
3 months ago by Alex Reynolds 35k
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0
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1.3k
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Comment: Comment: Some lines are not well organized in BED file, how to correct them ? Thanks a lo
3 months ago by Alex Reynolds 35k
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1
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1.3k
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Comment: Comment: Some lines are not well organized in BED file, how to correct them ? Thanks a lo
3 months ago by Alex Reynolds 35k
1
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1
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1.3k
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Answer: Answer: Some lines are not well organized in BED file, how to correct them ? Thanks a lo
3 months ago by Alex Reynolds 35k
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0
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383
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Answer: Answer: identify genes
4 months ago by Alex Reynolds 35k
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2
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1.8k
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Comment: Comment: PanDepth, an ultra-fast and efficient genomic tool for coverage calculation
4 months ago by Alex Reynolds 35k
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0
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610
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Comment: Comment: Where can I get a list of SNPs mapping overlapping genes in humans?
5 months ago by Alex Reynolds 35k
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0
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610
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Comment: Comment: Where can I get a list of SNPs mapping overlapping genes in humans?
5 months ago by Alex Reynolds 35k
3
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2
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610
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Answer: Answer: Where can I get a list of SNPs mapping overlapping genes in humans?
5 months ago by Alex Reynolds 35k
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1
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3.4k
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Comment: Comment: Decoding MM and ML tags in .SAM file
5 months ago by Alex Reynolds 35k
1
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0
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775
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Answer: Answer: Filter a BED file based on genome coordinates for gene names
5 months ago by Alex Reynolds 35k
1
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0
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404
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Answer: Answer: distance between chip peaks and individual TSS
6 months ago by Alex Reynolds 35k
0
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0
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612
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Answer: Answer: Simple tools for creation of figures of gene and protein structure
6 months ago by Alex Reynolds 35k
0
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0
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527
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Answer: Answer: Visualize raw rna fastq file and aligned bam file
6 months ago by Alex Reynolds 35k
1
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1
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5.9k
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Comment: Comment: Macbook M1 pro/M2 pro or Dell (with Ubuntu/other linux distribution) for bioinfo
6 months ago by Alex Reynolds 35k
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1
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1.2k
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Comment: Comment: Getting the overlap between two GTF files
7 months ago by Alex Reynolds 35k
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1
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1.2k
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Comment: Comment: Getting the overlap between two GTF files
7 months ago by Alex Reynolds 35k
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0
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1.2k
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Answer: Answer: Getting the overlap between two GTF files
7 months ago by Alex Reynolds 35k
1
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1
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672
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Comment: Comment: Mapping SNP rsIds/ positions to genes coding for proteins
7 months ago by Alex Reynolds 35k
1
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1
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672
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Answer: Answer: Mapping SNP rsIds/ positions to genes coding for proteins
7 months ago by Alex Reynolds 35k
0
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0
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759
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Answer: Answer: BED files
7 months ago by Alex Reynolds 35k
1
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1
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933
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Comment: Comment: Filter human transcription factors
7 months ago by Alex Reynolds 35k
0
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1
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1.5k
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Comment: Comment: Read block operation failed with BAM file
7 months ago by Alex Reynolds 35k
0
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0
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454
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Answer: Answer: Visualize where kmers are on a reference genome
7 months ago by Alex Reynolds 35k
0
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0
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1.5k
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Comment: Comment: Read block operation failed with BAM file
7 months ago by Alex Reynolds 35k
2
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8
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1.5k
views
Read block operation failed with BAM file
bgzip samtools bam pysam htslib
updated 7 months ago by 3.0k • written 7 months ago by 35k
2
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0
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750
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Answer: Answer: Create 10,000bp windows for a SNP file and assign each SNP to its respective win
7 months ago by Alex Reynolds 35k
0
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0
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1.5k
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Comment: Comment: Read block operation failed with BAM file
7 months ago by Alex Reynolds 35k
0
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0
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1.7k
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Comment: Comment: bedops alternative for bedtools -unionbedg ?
7 months ago by Alex Reynolds 35k
0
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0
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1.7k
views
Comment: Comment: bedops alternative for bedtools -unionbedg ?
8 months ago by Alex Reynolds 35k
2,874 results • Page 1 of 58
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