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Comment: Comment: Reads in IGV are mostly in intron regions
11 months ago by Kai_Qi ▴ 130
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1.0k
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Comment: Comment: Reads in IGV are mostly in intron regions
11 months ago by Kai_Qi ▴ 130
0
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1
reply
1.0k
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Comment: Comment: Reads in IGV are mostly in intron regions
11 months ago by Kai_Qi ▴ 130
1
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8
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1.0k
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Reads in IGV are mostly in intron regions
Patchseq RNA-seq
11 months ago by Kai_Qi ▴ 130
1
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1
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871
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Software/packages for analyzing differential isoforms from RNA-seq data?
RNA-Seq next-gen-sequencing
updated 22 months ago by 44k • written 3.5 years ago by ▴ 130
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0
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1.6k
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Comment: Comment: Can't load reference sequence from file 'GRCh37.fa': Unexpected character 'M' fo
2.3 years ago by Kai_Qi ▴ 130
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4
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1.6k
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Can't load reference sequence from file 'GRCh37.fa': Unexpected character 'M' found.
next-gen-sequencing RNA-Seq
updated 2.2 years ago by 44k • written 3.5 years ago by ▴ 130
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1
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1.1k
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Comment: Comment: Get upstream and downstream exon's starting site and ending site of an retained
2.9 years ago by Kai_Qi ▴ 130
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3
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1.1k
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Get upstream and downstream exon's starting site and ending site of an retained introns
RNAseq
updated 2.9 years ago by 82k • written 2.9 years ago by ▴ 130
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2.0k
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Comment: Comment: how to understand the P value of the Deseq2 results
3.1 years ago by Kai_Qi ▴ 130
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0
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2.0k
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Comment: Comment: how to understand the P value of the Deseq2 results
3.1 years ago by Kai_Qi ▴ 130
4
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5
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2.0k
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how to understand the P value of the Deseq2 results
statistics p_value DEseq2
updated 3.1 years ago by ★ 2.6k • written 3.1 years ago by ▴ 130
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0
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2.6k
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Comment: Comment: gzip: merged.fastq.gz not in gzip format
3.1 years ago by Kai_Qi ▴ 130
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1
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2.6k
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Comment: Comment: gzip: merged.fastq.gz not in gzip format
3.1 years ago by Kai_Qi ▴ 130
8
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4
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2.6k
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gzip: merged.fastq.gz not in gzip format
RNAseq
3.1 years ago by Kai_Qi ▴ 130
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0
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1.1k
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Comment: C: gencode gtf file derived geneID can't be annotated to gene symbol following Dese
3.2 years ago by Kai_Qi ▴ 130
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0
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1.1k
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Comment: C: gencode gtf file derived geneID can't be annotated to gene symbol following Dese
3.2 years ago by Kai_Qi ▴ 130
2
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3
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1.1k
views
gencode gtf file derived geneID can't be annotated to gene symbol following Deseq2 manual
R RNA-Seq gene
3.2 years ago by Kai_Qi ▴ 130
2
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3
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930
views
MEME cannot handle 318 sequence?
RNA-Seq ChIP-Seq rna-seq genome sequencing
updated 3.4 years ago by 35k • written 3.4 years ago by ▴ 130
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0
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930
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Comment: C: MEME cannot handle 318 sequence?
3.4 years ago by Kai_Qi ▴ 130
1
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1
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720
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how to do GeneOntology in R using DAVID or other packages to recommed?
RNA-Seq R rna-seq gene
3.4 years ago by Kai_Qi ▴ 130
1
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1
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1.2k
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Linear regression of the RNAseq results to get the genes whose expression change belong to the same trends
RNA-Seq R rna-seq sequencing
updated 3.4 years ago by ▴ 160 • written 3.4 years ago by ▴ 130
1
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0
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1.5k
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Answer: C: Deseq2: time series in 1 condition. Error in nbinomLRT(object, full = full, redu
3.4 years ago by Kai_Qi ▴ 130
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1
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1.5k
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Comment: C: Deseq2: time series in 1 condition. Error in nbinomLRT(object, full = full, redu
3.4 years ago by Kai_Qi ▴ 130
1
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3
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1.5k
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Deseq2: time series in 1 condition. Error in nbinomLRT(object, full = full, reduced = reduced, quiet = quiet
R RNA-Seq next-gen sequencing
3.4 years ago by Kai_Qi ▴ 130
0
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0
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749
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Comment: C: Removing ">" before coordinates and separate the coordinates in a single string
3.4 years ago by Kai_Qi ▴ 130
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0
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749
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Comment: C: Removing ">" before coordinates and separate the coordinates in a single string
3.4 years ago by Kai_Qi ▴ 130
1
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3
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749
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Removing ">" before coordinates and separate the coordinates in a single string format into a bed file
rna-seq gene next-gen sequence
3.4 years ago by Kai_Qi ▴ 130
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0
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590
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Comment: C: Header of first sequence is missing after grep
3.4 years ago by Kai_Qi ▴ 130
2
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2
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590
views
Header of first sequence is missing after grep
rna-seq RNA-Seq sequencing next-gen gene
updated 3.4 years ago by 161k • written 3.4 years ago by ▴ 130
0
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0
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3.5k
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Comment: C: Math-CDF Perl Module compiler issue
3.4 years ago by Kai_Qi ▴ 130
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0
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1.8k
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Comment: C: ls: cannot access *.filter.trim.fastq.gz: No such file or directory (problems wh
3.5 years ago by Kai_Qi ▴ 130
0
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0
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1.8k
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Comment: C: ls: cannot access *.filter.trim.fastq.gz: No such file or directory (problems wh
3.5 years ago by Kai_Qi ▴ 130
3
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4
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1.8k
views
ls: cannot access *.filter.trim.fastq.gz: No such file or directory (problems when combining individual steps into a full script)
RNA-Seq rna-seq sequencing sequence
updated 3.5 years ago by 44k • written 3.5 years ago by ▴ 130
0
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2
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890
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Comment: C: how to get the geneNames or bedfile from fasta sequences
3.5 years ago by Kai_Qi ▴ 130
0
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1
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890
views
Comment: C: how to get the geneNames or bedfile from fasta sequences
3.5 years ago by Kai_Qi ▴ 130
1
vote
6
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890
views
how to get the geneNames or bedfile from fasta sequences
RNA-Seq genome gene ChIP-Seq
updated 3.5 years ago by ▴ 140 • written 3.5 years ago by ▴ 130
0
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0
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825
views
Comment: C: will the bam files mapped from Ensembl index be ok to do featurecount with mm10
3.5 years ago by Kai_Qi ▴ 130
0
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0
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1.5k
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Comment: C: 9th column of the GTF file is exon_id instead of gene_id, is this normal?
3.5 years ago by Kai_Qi ▴ 130
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2
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1.5k
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9th column of the GTF file is exon_id instead of gene_id, is this normal?
RNA-Seq alignment sequencing
3.5 years ago by Kai_Qi ▴ 130
0
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0
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825
views
Comment: C: will the bam files mapped from Ensembl index be ok to do featurecount with mm10
3.5 years ago by Kai_Qi ▴ 130
1
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3
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825
views
will the bam files mapped from Ensembl index be ok to do featurecount with mm10
RNA-Seq rna-seq alignment sequence
3.5 years ago by Kai_Qi ▴ 130
0
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0
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37k
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Comment: C: How to know that your RNA-seq is stranded or not?
3.5 years ago by Kai_Qi ▴ 130
6
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2
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1.1k
views
samtools index cannot index concatenated bam?
alignment rna-seq RNA-Seq next-gen
updated 3.5 years ago by 14k • written 3.5 years ago by ▴ 130
0
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0
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1.4k
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Comment: C: using macs2 to call peaks on eCLIP-seq data
3.5 years ago by Kai_Qi ▴ 130
0
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0
replies
605
views
How to visulize bed6 file generated from Pureclip analysis
RNA-Seq rna-seq sequencing next-gen
3.5 years ago by Kai_Qi ▴ 130
0
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0
replies
1.6k
views
Comment: C: Can't load reference sequence from file 'GRCh37.fa': Unexpected character 'M' fo
3.5 years ago by Kai_Qi ▴ 130
0
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1
reply
1.4k
views
using macs2 to call peaks on eCLIP-seq data
rna-seq RNA-Seq ChIP-Seq
3.5 years ago by Kai_Qi ▴ 130
0
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0
replies
1.1k
views
Filtering uniquely mapping reads from bam files generated from STAR
rna-seq RNA-Seq ChIP-Seq next-gen
3.5 years ago by Kai_Qi ▴ 130
0
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1
reply
2.0k
views
Comment: C: sbacth on multiple fastq files sequentially
3.6 years ago by Kai_Qi ▴ 130
181 results • Page 1 of 4
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