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votes
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184
views
Issues with SnpEff Assuming Circular Chromosomes in Eukaryotic Genome Analysis
snpEff
20 days ago by
ekirsch
• 0
0
votes
0
replies
346
views
Comment:
Comment: vcf file: number of samples does not match number of columns
5 weeks ago by
ekirsch
• 0
0
votes
2
replies
346
views
vcf file: number of samples does not match number of columns
vcf
bcftools
5 weeks ago by
ekirsch
• 0
0
votes
1
reply
457
views
Comment:
Comment: Issues filtering VCF file with bcftools/vcftools
6 weeks ago by
ekirsch
• 0
0
votes
1
reply
457
views
Comment:
Comment: Issues filtering VCF file with bcftools/vcftools
updated 7 weeks ago by
Pierre Lindenbaum
161k • written 7 weeks ago by
ekirsch
• 0
1
vote
1
reply
338
views
Advice for genetic diversity stats analysis with both variant and variant sites
pi
diversity
vcf
genetics
updated 6 weeks ago by
dthorbur
★ 1.9k • written 7 weeks ago by
ekirsch
• 0
0
votes
5
replies
457
views
Issues filtering VCF file with bcftools/vcftools
vcftools
vcf
bcftools
updated 6 weeks ago by
Pierre Lindenbaum
161k • written 8 weeks ago by
ekirsch
• 0
0
votes
0
replies
313
views
Comment:
Comment: vcf-validator could not parse the alleles
12 weeks ago by
ekirsch
• 0
1
vote
2
replies
313
views
vcf-validator could not parse the alleles
vcf-validator
vcftools
vcf
12 weeks ago by
ekirsch
• 0
0
votes
0
replies
224
views
How to use --chr flag (vcftools --LROH) with a vcf file that uses scaffold notation
vcftools
scaffold
ROH
3 months ago by
ekirsch
• 0
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