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Comment: Comment: Limma Analysis Agilent Microarray Data (GPL1708)
2 days ago by Gordon Smyth ★ 7.1k
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0
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1.3k
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Answer: Answer: Differential Expression using Isoseq-supplemented reference transcriptome
3 days ago by Gordon Smyth ★ 7.1k
1
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1
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372
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Answer: Answer: Limma Analysis Agilent Microarray Data (GPL1708)
5 days ago by Gordon Smyth ★ 7.1k
0
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1
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249
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Answer: Answer: Correct way to compare multiple treaments between RNA-Seq samples using edgeR?
5 days ago by Gordon Smyth ★ 7.1k
4
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1
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285
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Answer: Answer: How to use limma to find differentially expressed genes in response to a continu
5 days ago by Gordon Smyth ★ 7.1k
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0
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248
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Comment: Comment: permutation test in edgeR
9 days ago by Gordon Smyth ★ 7.1k
1
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0
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433
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Comment: Comment: Difference when using difference number of pathways score to compare between 3 g
11 days ago by Gordon Smyth ★ 7.1k
1
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0
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269
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Answer: Answer: Removing Illumina microarray probes with no expression HumanHT-12v4
11 days ago by Gordon Smyth ★ 7.1k
2
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1
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392
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Answer: Answer: differential gene expression analysis when not all samples have an untreated cou
14 days ago by Gordon Smyth ★ 7.1k
1
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1
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423
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Comment: Comment: Limma compare between 3 conditions vs 2 conditions
15 days ago by Gordon Smyth ★ 7.1k
2
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0
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261
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Answer: Answer: Choosing an FC Threshold
5 weeks ago by Gordon Smyth ★ 7.1k
1
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0
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1.0k
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Comment: Comment: Shrink logFC values after edgeR
5 weeks ago by Gordon Smyth ★ 7.1k
0
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1
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470
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Comment: Comment: 'Invalid parameter' error to generate a count matrix using featurecounts
6 weeks ago by Gordon Smyth ★ 7.1k
0
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1
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470
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Answer: Answer: 'Invalid parameter' error to generate a count matrix using featurecounts
6 weeks ago by Gordon Smyth ★ 7.1k
1
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0
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446
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Comment: Comment: Differential express genes in imbalance groups
6 weeks ago by Gordon Smyth ★ 7.1k
3
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3
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446
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Answer: Answer: Differential express genes in imbalance groups
6 weeks ago by Gordon Smyth ★ 7.1k
0
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0
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215
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Comment: Comment: Computing mid parent value for DE analysis
7 weeks ago by Gordon Smyth ★ 7.1k
1
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0
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657
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Answer: Answer: RNA-seq - Creating SAF from NCBI gff for Subread featureCounts - keep 'gene' or
8 weeks ago by Gordon Smyth ★ 7.1k
1
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0
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1.2k
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Answer: Answer: MA graphs for EdgeR and Voom vary
8 weeks ago by Gordon Smyth ★ 7.1k
2
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0
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1.0k
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Comment: Comment: Shrink logFC values after edgeR
8 weeks ago by Gordon Smyth ★ 7.1k
2
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0
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723
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Answer: Answer: Seeking Beginner-Friendly Resources for Deepening Understanding of Bioinformatic
8 weeks ago by Gordon Smyth ★ 7.1k
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0
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458
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Comment: Comment: Does the order of the batch variable matter in Limma design matrix?
8 weeks ago by Gordon Smyth ★ 7.1k
0
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0
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3.8k
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Comment: Comment: Can one plot % of variance using the plotMDS function?
8 weeks ago by Gordon Smyth ★ 7.1k
1
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1
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458
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Answer: Answer: Does the order of the batch variable matter in Limma design matrix?
6 weeks ago by Gordon Smyth ★ 7.1k
6
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1
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475
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Answer: Answer: Bayesian Differential Expression
10 weeks ago by Gordon Smyth ★ 7.1k
0
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0
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452
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Comment: Comment: filtering lowly expressed reads
12 weeks ago by Gordon Smyth ★ 7.1k
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0
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235
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Comment: Comment: Design matrix after RUVg correction
11 weeks ago by Gordon Smyth ★ 7.1k
2
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0
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2.8k
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Comment: Comment: Converting LogCPM to raw counts for DESEQ2
12 weeks ago by Gordon Smyth ★ 7.1k
1
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0
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918
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Answer: Answer: EdgeR: upregulated with respect to what group?
12 weeks ago by Gordon Smyth ★ 7.1k
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0
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1.3k
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Answer: Answer: Is there a program to average read counts from technical replicates?
12 weeks ago by Gordon Smyth ★ 7.1k
0
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0
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901
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Comment: Comment: How do I work out which condition the genes are down-regulated in?
12 weeks ago by Gordon Smyth ★ 7.1k
0
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0
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901
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Answer: Answer: How do I work out which condition the genes are down-regulated in?
12 weeks ago by Gordon Smyth ★ 7.1k
0
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0
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1.6k
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Answer: Answer: positive and negative Fold Change glmLRT test
12 weeks ago by Gordon Smyth ★ 7.1k
0
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0
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741
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Answer: Answer: logFoldChange computed by EdgeR different from naive log2FCcomputed based on rea
12 weeks ago by Gordon Smyth ★ 7.1k
2
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1
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1.0k
views
Answer: Answer: Shrink logFC values after edgeR
12 weeks ago by Gordon Smyth ★ 7.1k
1
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1
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486
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Comment: Comment: Differing p-value cutoffs of limma derived DEGs in volcanoplots
3 months ago by Gordon Smyth ★ 7.1k
3
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1
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486
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Answer: Answer: Differing p-value cutoffs of limma derived DEGs in volcanoplots
3 months ago by Gordon Smyth ★ 7.1k
0
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0
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304
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Comment: Comment: Monotonic genes in results of differential gene expression analysis
3 months ago by Gordon Smyth ★ 7.1k
1
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0
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275
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Comment: Comment: Gene expression of microarray data
3 months ago by Gordon Smyth ★ 7.1k
0
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1
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576
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Comment: Comment: Differential RNA editing using edgeR
3 months ago by Gordon Smyth ★ 7.1k
2
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1
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576
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Answer: Answer: Differential RNA editing using edgeR
3 months ago by Gordon Smyth ★ 7.1k
0
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1
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508
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Comment: Comment: how to start DEG analysis after featurecounts
3 months ago by Gordon Smyth ★ 7.1k
0
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0
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1.6k
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Comment: Comment: how to test for differential expression in samples where a global increase in ge
4 months ago by Gordon Smyth ★ 7.1k
0
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1
reply
1.6k
views
Comment: Comment: how to test for differential expression in samples where a global increase in ge
4 months ago by Gordon Smyth ★ 7.1k
0
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0
replies
1.6k
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Comment: Comment: how to test for differential expression in samples where a global increase in ge
4 months ago by Gordon Smyth ★ 7.1k
0
votes
1
reply
1.6k
views
Comment: Comment: how to test for differential expression in samples where a global increase in ge
4 months ago by Gordon Smyth ★ 7.1k
1
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0
replies
1.6k
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Comment: Comment: how to test for differential expression in samples where a global increase in ge
4 months ago by Gordon Smyth ★ 7.1k
1
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1
reply
1.6k
views
Comment: Comment: how to test for differential expression in samples where a global increase in ge
4 months ago by Gordon Smyth ★ 7.1k
1
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2
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1.6k
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Answer: Answer: how to test for differential expression in samples where a global increase in ge
4 months ago by Gordon Smyth ★ 7.1k
2
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0
replies
1.6k
views
Answer: Answer: Effect of Bootstrapping/Gibbs Sampling in Salmon Counts
4 months ago by Gordon Smyth ★ 7.1k
503 results • Page 1 of 11
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