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4
votes
2
replies
1.9k
views
How to convert SAM/BAM file to GTF/GFF file?
GTF SAM BAM GFF minimap2
updated 4 weeks ago by ▴ 130 • written 12 months ago by • 0
0
votes
0
replies
170
views
How to identify structural variants (SV) breakpoints using alignment PAF file?
SV minimap2 genome alignment
4 months ago by BioinfoBee • 0
9
votes
5
replies
1.6k
views
How to convert hard-masked genome to soft-masked?
repeatmasking repeats
updated 6 months ago by ▴ 130 • written 14 months ago by • 0
0
votes
1
reply
1.0k
views
Comment: Comment: How to check RNAseq support for annotated genes?
7 months ago by BioinfoBee • 0
0
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0
replies
1.0k
views
Comment: Comment: How to check RNAseq support for annotated genes?
7 months ago by BioinfoBee • 0
0
votes
1
reply
1.0k
views
Comment: Comment: How to check RNAseq support for annotated genes?
7 months ago by BioinfoBee • 0
3
votes
7
replies
1.0k
views
How to check RNAseq support for annotated genes?
gene RNA-seq annotation
updated 7 months ago by 54k • written 8 months ago by • 0
0
votes
1
reply
970
views
Comment: Comment: How to best represent three biological replicates of single tissue sample?
9 months ago by BioinfoBee • 0
0
votes
1
reply
970
views
Comment: Comment: How to best represent three biological replicates of single tissue sample?
9 months ago by BioinfoBee • 0
3
votes
5
replies
970
views
How to best represent three biological replicates of single tissue sample?
biological-replicates RNA-Seq
updated 9 months ago by 10k • written 10 months ago by • 0
0
votes
0
replies
1.3k
views
Comment: Comment: How to filter gene counts by keeping genes that have a count of of 10 or more in
10 months ago by BioinfoBee • 0
0
votes
1
reply
1.3k
views
Comment: Comment: How to filter gene counts by keeps genes that have a gene count of of 10 or more
10 months ago by BioinfoBee • 0
3
votes
5
replies
1.3k
views
How to filter gene counts by keeping genes that have a count of of 10 or more in at least three samples
filtering counts gene RNA-Seq
10 months ago by BioinfoBee • 0
0
votes
0
replies
361
views
How to generate heat_map plot from tspex?
tissue-specificity txpex
updated 11 months ago by 142k • written 11 months ago by • 0
4
votes
7
replies
1.2k
views
How to sort gff3 according to chromosome order?
gff3 sort
updated 11 months ago by 161k • written 11 months ago by • 0
0
votes
2
replies
1.2k
views
Comment: Comment: How to sort gff3 according to chromosome order?
11 months ago by BioinfoBee • 0
0
votes
1
reply
1.2k
views
Comment: Comment: How to sort gff3 according to chromosome order?
11 months ago by BioinfoBee • 0
0
votes
0
replies
1.7k
views
Comment: Comment: How to extract summary statistics from GFF3 /GTF file?
12 months ago by BioinfoBee • 0
3
votes
9
replies
1.7k
views
How to extract summary statistics from GFF3 /GTF file?
gff3 gene-annotation summary-statistics
updated 12 months ago by 8.6k • written 12 months ago by • 0
0
votes
0
replies
643
views
Comment: Comment: How to retain proteins with both start and stop codons, and remove those with in
13 months ago by BioinfoBee • 0
1
vote
2
replies
643
views
How to retain proteins with both start and stop codons, and remove those with internal stop codons from FASTA file ?
gene annotation
13 months ago by BioinfoBee • 0
8
votes
10
replies
1.8k
views
How to convert GTF output of TSEBRA to gff3 file as an input for EVM ?
gtf braker2 gff3 tsebra
updated 10 months ago by 44k • written 13 months ago by • 0
0
votes
0
replies
1.8k
views
Comment: Comment: How to convert GTF output of TSEBRA to gff3 file as an input for EVM ?
13 months ago by BioinfoBee • 0
0
votes
0
replies
1.8k
views
Comment: Comment: How to convert GTF output of TSEBRA to gff3 file as an input for EVM ?
13 months ago by BioinfoBee • 0
0
votes
2
replies
1.8k
views
Comment: Comment: How to convert GTF output of TSEBRA to gff3 file as an input for EVM ?
13 months ago by BioinfoBee • 0
0
votes
1
reply
1.8k
views
Comment: Comment: How to convert GTF output of TSEBRA to gff3 file as an input for EVM ?
13 months ago by BioinfoBee • 0
0
votes
0
replies
1.2k
views
Comment: Comment: How to generate GFF/GTF file from cDNA transcipts FASTA file?
13 months ago by BioinfoBee • 0
0
votes
1
reply
1.2k
views
Comment: Comment: How to generate GFF/GTF file from cDNA transcipts FASTA file?
13 months ago by BioinfoBee • 0
0
votes
1
reply
8.7k
views
Comment: Comment: How can I easily remove overlapping transcripts, keeping only longest transcript
13 months ago by BioinfoBee • 0
4
votes
5
replies
1.2k
views
How to generate GFF/GTF file from cDNA transcipts FASTA file?
gff3 gtf transcript cDNA
13 months ago by BioinfoBee • 0
0
votes
1
reply
8.7k
views
Comment: Comment: How can I easily remove overlapping transcripts, keeping only longest transcript
14 months ago by BioinfoBee • 0
0
votes
1
reply
8.7k
views
Comment: Comment: How can I easily remove overlapping transcripts, keeping only longest transcript
14 months ago by BioinfoBee • 0
0
votes
1
reply
8.7k
views
Comment: Comment: How can I easily remove overlapping transcripts, keeping only longest transcript
14 months ago by BioinfoBee • 0
0
votes
1
reply
8.7k
views
Comment: Comment: How can I easily remove overlapping transcripts, keeping only longest transcript
14 months ago by BioinfoBee • 0
0
votes
1
reply
1.6k
views
Comment: Comment: How to convert hard-masked genome to soft-masked?
14 months ago by BioinfoBee • 0
0
votes
1
reply
1.5k
views
Comment: Comment: Repeat masking for genome annotation
14 months ago by BioinfoBee • 0
0
votes
0
replies
379
views
How to merge TransDecoder gff3 with BRAKER gff3?
BRAKER Transdecoder gene-annotation gff3 genome
14 months ago by BioinfoBee • 0
0
votes
1
reply
1.5k
views
Comment: Comment: Repeat masking for genome annotation
15 months ago by BioinfoBee • 0
0
votes
1
reply
8.7k
views
Comment: Comment: How can I easily remove overlapping transcripts, keeping only longest transcript
15 months ago by BioinfoBee • 0
0
votes
1
reply
8.7k
views
Comment: Comment: How can I easily remove overlapping transcripts, keeping only longest transcript
15 months ago by BioinfoBee • 0
0
votes
1
reply
8.7k
views
Comment: Comment: How can I easily remove overlapping transcripts, keeping only longest transcript
15 months ago by BioinfoBee • 0
0
votes
2
replies
4.1k
views
Comment: Comment: Sort gff3 on chromosome, position and then featuretype (gene, mRNA, exon, CDS)
15 months ago by BioinfoBee • 0
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