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Comment: Comment: TaxID mapping file
12 days ago by Lada ▴ 30
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0
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329
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Comment: Comment: TaxID mapping file
12 days ago by Lada ▴ 30
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3
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329
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TaxID mapping file
annotation blobtools RNAseq decontamination transcriptomes
12 days ago by Lada ▴ 30
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0
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427
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Comment: Comment: How to trim transcripts using information from NCBI contamination screen report
22 days ago by Lada ▴ 30
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1
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427
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Comment: Comment: How to trim transcripts using information from NCBI contamination screen report
23 days ago by Lada ▴ 30
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0
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427
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Comment: Comment: How to trim transcripts using information from NCBI contamination screen report
23 days ago by Lada ▴ 30
2
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5
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427
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How to trim transcripts using information from NCBI contamination screen report
RNAseq assembly transcriptome contamination
22 days ago by Lada ▴ 30
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0
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24k
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Comment: Comment: BLAST options: max_target_seqs and num_alignments
8 weeks ago by Lada ▴ 30
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0
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366
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Pearson correlation for RNAseq data - input formats
vst Pearson-correlation TPM rlog RNA-seq
updated 6 months ago by 43k • written 6 months ago by ▴ 30
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305
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Salmon - mapping outputs
transcriptome RNAseq Salmon
6 months ago by Lada ▴ 30
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1.3k
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Comment: Comment: Providing multiple read files to Salmon
6 months ago by Lada ▴ 30
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1
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1.3k
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Comment: Comment: Providing multiple read files to Salmon
6 months ago by Lada ▴ 30
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1
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2.5k
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Comment: Comment: How to remove fasta headers in a multifasta file and write file name as a fasta
8 months ago by Lada ▴ 30
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2
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2.5k
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Comment: Comment: How to remove fasta headers in a multifasta file and write file name as a fasta
8 months ago by Lada ▴ 30
0
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0
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358
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OrthoPhy
orthophy orthofinder
updated 8 months ago by 43k • written 8 months ago by ▴ 30
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2
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2.5k
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Comment: Comment: How to remove fasta headers in a multifasta file and write file name as a fasta
updated 8 months ago by 142k • written 8 months ago by ▴ 30
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0
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590
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Comment: Comment: ML tree inferred from multiple genes
8 months ago by Lada ▴ 30
1
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2
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590
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ML tree inferred from multiple genes
phylogeny iqtree ML phylotranscriptomics orthologues
8 months ago by Lada ▴ 30
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0
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847
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Answer: Answer: How to download Time Calibration Data for Phylogenetic tree estimation ?
8 months ago by Lada ▴ 30
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0
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930
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Answer: Answer: Fossil calibration in PAML software?
8 months ago by Lada ▴ 30
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0
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888
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Comment: Comment: Multiple sequence aligments - parallelisation
8 months ago by Lada ▴ 30
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1
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888
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Comment: Comment: Multiple sequence aligments - parallelisation
8 months ago by Lada ▴ 30
0
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1
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888
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Comment: Comment: Multiple sequence aligments - parallelisation
8 months ago by Lada ▴ 30
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5
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888
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Multiple sequence aligments - parallelisation
MSA phylotranscriptomics muscle clustal
8 months ago by Lada ▴ 30
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0
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770
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Comment: Comment: Expected number of raw reads in fq.gz files in PE sequencing
8 months ago by Lada ▴ 30
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0
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770
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Comment: Comment: Expected number of raw reads in fq.gz files in PE sequencing
8 months ago by Lada ▴ 30
3
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5
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770
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Expected number of raw reads in fq.gz files in PE sequencing
RNA-seq fastq transcriptomics
updated 8 months ago by 43k • written 8 months ago by ▴ 30
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0
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809
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Comment: Comment: EggNOG mapper annotation results
9 months ago by Lada ▴ 30
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1
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1.0k
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Comment: Comment: Comparative transcriptomics
12 months ago by Lada ▴ 30
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0
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486
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Comment: Comment: Corset -D parameter
13 months ago by Lada ▴ 30
1
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2
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486
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Corset -D parameter
RNAseq transcriptomic Corset
13 months ago by Lada ▴ 30
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0
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916
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Comment: Comment: Salmon lib_format_counts.json - explanation
14 months ago by Lada ▴ 30
2
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2
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916
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Salmon lib_format_counts.json - explanation
RNAseq strand-specificity transcriptomic Salmon
14 months ago by Lada ▴ 30
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0
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441
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Comment: Comment: What is correct percentage of sense-stranded transcripts in directional de novo
15 months ago by Lada ▴ 30
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1
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441
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What is correct percentage of sense-stranded transcripts in directional de novo assemblies ?
Trinity strand-specificity RNA-seq Transdecoder
updated 15 months ago by 43k • written 15 months ago by ▴ 30
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1
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26k
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Comment: Comment: Gene Set Enrichment Analysis after DESeq2
15 months ago by Lada ▴ 30
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0
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2.2k
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Comment: Comment: GSEA on nonmodel organisms
15 months ago by Lada ▴ 30
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0
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2.2k
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Comment: Comment: GSEA on nonmodel organisms
15 months ago by Lada ▴ 30
2
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4
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2.2k
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GSEA on nonmodel organisms
GSEA RNAseq transcriptomics multispecies R
15 months ago by Lada ▴ 30
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0
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1.2k
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Comment: Comment: Differentially gene expression multispecies
16 months ago by Lada ▴ 30
1
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0
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535
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Comment: Comment: How to normalise counts to compare RNAseq results between two spcecies
16 months ago by Lada ▴ 30
0
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1
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1.0k
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Comment: Comment: Comparative transcriptomics
16 months ago by Lada ▴ 30
0
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0
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992
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Comment: Comment: comparative transcriptome - how to normalize and analyze DEGs?
16 months ago by Lada ▴ 30
0
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1
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1.6k
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Comment: Comment: Differential expression analysis
16 months ago by Lada ▴ 30
0
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0
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930
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Comment: Comment: When comparing gene expression in different species, should I assemble separate
updated 16 months ago by 43k • written 16 months ago by ▴ 30
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0
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686
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Answer: Answer: Differential Expression Analyses between closely related species
16 months ago by Lada ▴ 30
0
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0
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667
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Comment: Comment: Transcriptome assembly -mixing stranded and non-stranded data
2.2 years ago by Lada ▴ 30
0
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1
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667
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Comment: Comment: Transcriptome assembly -mixing stranded and non-stranded data
2.2 years ago by Lada ▴ 30
3
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4
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667
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Transcriptome assembly -mixing stranded and non-stranded data
Transcriptome assembly
2.2 years ago by Lada ▴ 30
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0
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2.7k
views
Answer: Answer: strand-specific transcriptome Oases vs. CLC
2.2 years ago by Lada ▴ 30
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