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Batch correction for eQTL analysis
batch eqtl batch-correction batch-effect
updated 27 days ago by 43k • written 3 months ago by ▴ 20
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267
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Should I perform eQTL colocalization for just one of eGenes at a time?
colocalization coloc eCaviar eQTL
5 months ago by maximal_life ▴ 20
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323
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How should I adjust covariates in eQTL analysis with an interaction term?
covariate interaction eQTL
8 months ago by maximal_life ▴ 20
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666
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Comment: Comment: Multiple RNA-seq fastq files for one sample in GEO database
8 months ago by maximal_life ▴ 20
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28k
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Comment: Comment: removing batch effects using ComBat and SVA
8 months ago by maximal_life ▴ 20
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1
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666
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Comment: Comment: Multiple RNA-seq fastq files for one sample in GEO database
8 months ago by maximal_life ▴ 20
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4
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666
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Multiple RNA-seq fastq files for one sample in GEO database
GEO RNA-seq multiplefiles
8 months ago by maximal_life ▴ 20
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1
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467
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Should genotype PCA in eQTL analysis be performed using all SNPs? or can be with a subset of SNPs?
genotype eQTL SNP PCA
updated 10 months ago by 4.2k • written 10 months ago by ▴ 20
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556
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Answer: Answer: featureCounts problems with GTF generated by myself
10 months ago by maximal_life ▴ 20
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1
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375
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Is there any way to figure out whole gene networks in the normal tissue solely?
network functional gene pathway
updated 13 months ago by 82k • written 13 months ago by ▴ 20
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343
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Homer findPeaks output gave me weird 'p-value vs Control'.
peakcalling homer findPeaks pvalue
2.2 years ago by maximal_life ▴ 20
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