4 days ago by
DGTool
•
0
0
votes
0
replies
119
views
1
vote
2
replies
227
views
0
votes
1
reply
260
views
3 days ago by
Expert
▴
10
0
votes
1
reply
217
views
updated 3 days ago by
marco.barr
▴
100
•
written 5 days ago by
Natali
•
0
0
votes
0
replies
155
views
0
votes
1
reply
203
views
0
votes
1
reply
199
views
0
votes
6
replies
426
views
1
vote
3
replies
284
views
3 days ago by
Lada
▴
30
1
vote
0
replies
148
views
0
votes
0
replies
138
views
5 days ago by
Javier
•
0
0
votes
1
reply
235
views
updated 5 days ago by
Thanujay S
•
0
•
written 5 days ago by
yahn
•
0
0
votes
0
replies
130
views
2
votes
2
replies
218
views
updated 5 days ago by
GenoMax
142k
•
written 6 days ago by
ahmad.sajad4541
•
0
0
votes
0
replies
131
views
6 days ago by
marco.barr
▴
100
0
votes
0
replies
321
views
0
votes
2
replies
251
views
0
votes
0
replies
147
views
3
votes
5
replies
288
views
2
votes
3
replies
292
views
0
votes
0
replies
147
views
0
votes
0
replies
135
views
3
votes
8
replies
6.6k
views
7 follow
updated 6 days ago by
Sd
•
0
•
written 5.1 years ago by
Nicolas Rosewick
11k
0
votes
2
replies
203
views
1
vote
7
replies
528
views
updated 1 day ago by
Chris Dean
▴
400
•
written 6 days ago by
sovrappensiero
▴
90
3
votes
8
replies
520
views
0
votes
1
reply
158
views
updated 6 days ago by
Mensur Dlakic
★
27k
•
written 6 days ago by
Arun Sai Kumar
•
0
0
votes
0
replies
102
views
0
votes
1
reply
231
views
1
vote
1
reply
145
views
updated 6 days ago by
Ram
43k
•
written 7 days ago by
marco.barr
▴
100
0
votes
0
replies
98
views
0
votes
0
replies
100
views
7 days ago by
James
▴
10
0
votes
1
reply
590
views
1
vote
3
replies
247
views
updated 6 days ago by
barslmn
★
2.1k
•
written 7 days ago by
poordumbsillyidiot
•
0
0
votes
1
reply
210
views
0
votes
0
replies
102
views
0
votes
0
replies
128
views
0
votes
1
reply
155
views
updated 7 days ago by
Ram
43k
•
written 7 days ago by
ernestine.kubi
•
0
0
votes
0
replies
108
views
1
vote
2
replies
263
views
7 days ago by
rianna.collins
•
0
0
votes
1
reply
194
views
0
votes
0
replies
151
views
0
votes
1
reply
689
views
updated 8 days ago by
Ram
43k
•
written 8 days ago by
Dr Huma Naz
•
0
0
votes
5
replies
390
views
1
vote
1
reply
240
views
updated 8 days ago by
Ram
43k
•
written 8 days ago by
Jonathan Yoou
▴
60
1
vote
2
replies
299
views
1
vote
3
replies
297
views
0
votes
2
replies
231
views
2 days ago by
Ahiad Chen Zion
•
0
0
votes
0
replies
129
views
updated 9 days ago by
Ram
43k
•
written 9 days ago by
Alexandros
•
0
0
votes
1
reply
177
views
Recent Votes
Recent Locations •
All
Sweden, 1 minute ago
France, 2 minutes ago
United States, 2 minutes ago
Italy, 4 minutes ago
United States, 4 minutes ago
Israel, 5 minutes ago
Netherlands, 5 minutes ago
Recent Awards •
All
Popular Question to
LauferVA
4.2k
Popular Question to
ManuelDB
▴
80
Popular Question to
nkls063408
•
0
Popular Question to
rj.rezwan
•
0
Scholar to
Pierre Lindenbaum
161k
Popular Question to
Albert
•
0
Recent Replies
Comment: Contig assembly task, errors
by
rackbersingh
•
0
Hi Phillip,
Thanks for providing an answer and clearing up some confusion, looking into what you said about older assemblers reverse comp…
Comment: How to analyze Infinium Mouse Methylation BeadChip array data?
by
Tawny
▴
180
Did you get this figured out? I am having the same error in R.
Answer: JASPAR2024_getMatrixSet error
by
Raghad
•
0
Try this:
```r
#Read the motifs
library(JASPAR2024)
library(TFBSTools)
jaspar <- JASPAR2024()
sq24 <- RSQLite::dbConnect(RSQLite::SQLite…
Answer: How to convert normalized BigWig file to count matrix?
by
ATpoint
82k
It's not possible. Gene counts are a region aggregate, bigwigs are a per-base readout and you cannot use normalized counts for mentioned to…
Comment: bcftools - reducing to "sites-only"?
by
Pierre Lindenbaum
161k
> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Comment: bcftools - reducing to "sites-only"?
by
Matthew
•
0
Thank you Pierre!
Not sure why I didn't notice that (I should have)
Comment: How to convert normalized BigWig file to count matrix?
by
Pierre Lindenbaum
161k
bigwig is chrom/start/end/value . what kind of matrix do you want ?
Comment: How to convert normalized BigWig file to count matrix?
by
feather-W
•
0
I want to use the matrix derived from bigwig files to perform different analysis by DESeq2 or edgeR.
Answer: Have you ever obtained user guide of ExomeCNV?
by
michael.s
▴
10
I have uploaded the ExomeCNV (v1.4) user manual [here][1].
[1]: https://fastupload.io/hZbU
Answer: Server or aws cloud- which one is better for gatk pipeline
by
GenoMax
142k
I assume you mean "server" as in local hardware that you own/control since "cloud" is a just bunch of servers on internet that you rent (pa…
Answer: Server or aws cloud- which one is better for gatk pipeline
by
Michael
54k
I think that is more a matter of convenience and legality. It mostly depends on who pays for it and what you prefer. Both solutions should …
Comment: How to solve the error 'ERROR::MATE_NOT_FOUND:Found xxx unpaired mates' when ru
by
Pierre Lindenbaum
161k
> could you please explain what the collate does?
http://www.htslib.org/doc/samtools-collate.html
Comment: ComBat_Seq stuck adjusting the data
by
Jaïr
•
0
Same keeps happening to me; but it is weird, I corrected the batch effect with the same exact function a few months ago and worked fine. I …
Comment: How to solve the error 'ERROR::MATE_NOT_FOUND:Found xxx unpaired mates' when ru
by
Lila M
★
1.2k
Thank you for the feedback! I already used just the `samtools fastq -1 R1.fq.gz -2 R2.fq.gz -s Rx.fq.gz -0 R0.fq.gz`. Could you please exp…
Comment: Nextflow: how to get the process work dir, within the process
by
Pierre Lindenbaum
161k
> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Traffic: 2994 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6