updated 2 days ago by
Xiaofen
•
0
•
written 2 days ago by
toddknutson
▴
60
0
votes
2
replies
212
views
0
votes
0
replies
121
views
0
votes
1
reply
521
views
0
votes
0
replies
154
views
1
vote
0
replies
228
views
0
votes
0
replies
170
views
17 days ago by
Ben_Ensembl
★
2.4k
0
votes
0
replies
273
views
0
votes
0
replies
222
views
17 days ago by
Ben_Ensembl
★
2.4k
0
votes
0
replies
222
views
0
votes
0
replies
2.0k
views
Recent Votes
Recent Locations •
All
Hungary/Szeged/BRC, just now
Czechia, just now
United Kingdom, just now
UK, 3 minutes ago
United States, 3 minutes ago
Oviedo, 4 minutes ago
Spain, 4 minutes ago
Recent Awards •
All
Popular Question to
ManuelDB
▴
80
Popular Question to
nkls063408
•
0
Popular Question to
rj.rezwan
•
0
Scholar to
Pierre Lindenbaum
161k
Popular Question to
Albert
•
0
Popular Question to
Gordon Smyth
★
7.1k
Recent Replies
Comment: bcftools - reducing to "sites-only"?
by
Pierre Lindenbaum
161k
> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Comment: bcftools - reducing to "sites-only"?
by
Matthew
•
0
Thank you Pierre!
Not sure why I didn't notice that (I should have)
Comment: How to convert normalized BigWig file to count matrix?
by
Pierre Lindenbaum
161k
bigwig is chrom/start/end/value . what kind of matrix do you want ?
Comment: How to convert normalized BigWig file to count matrix?
by
feather-W
•
0
I want to use the matrix derived from bigwig files to perform different analysis by DESeq2 or edgeR.
Answer: Have you ever obtained user guide of ExomeCNV?
by
michael.s
▴
10
I have uploaded the ExomeCNV (v1.4) user manual [here][1].
[1]: https://fastupload.io/hZbU
Answer: Server or aws cloud- which one is better for gatk pipeline
by
GenoMax
142k
I assume you mean "server" as in local hardware that you own/control since "cloud" is a just bunch of servers on internet that you rent (pa…
Answer: Server or aws cloud- which one is better for gatk pipeline
by
Michael
54k
I think that is more a matter of convenience and legality. It mostly depends on who pays for it and what you prefer. Both solutions should …
Comment: How to solve the error 'ERROR::MATE_NOT_FOUND:Found xxx unpaired mates' when ru
by
Pierre Lindenbaum
161k
> could you please explain what the collate does?
http://www.htslib.org/doc/samtools-collate.html
Comment: ComBat_Seq stuck adjusting the data
by
Jaïr
•
0
Same keeps happening to me; but it is weird, I corrected the batch effect with the same exact function a few months ago and worked fine. I …
Comment: How to solve the error 'ERROR::MATE_NOT_FOUND:Found xxx unpaired mates' when ru
by
Lila M
★
1.2k
Thank you for the feedback! I already used just the `samtools fastq -1 R1.fq.gz -2 R2.fq.gz -s Rx.fq.gz -0 R0.fq.gz`. Could you please exp…
Comment: Nextflow: how to get the process work dir, within the process
by
Pierre Lindenbaum
161k
> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Answer: How to solve the error 'ERROR::MATE_NOT_FOUND:Found xxx unpaired mates' when ru
by
Pierre Lindenbaum
161k
faster use samtools collate+ fastq
samtools collate -uOn128 in.bam TMPDIR | samtools fastq -1 R1.fq.gz -2 R2.fq.gz -s Rx.fq.gz -0 R…
Comment: Nextflow: how to get the process work dir, within the process
by
ScottDansk
▴
10
legend thank you so much!
Answer: Nextflow: how to get the process work dir, within the process
by
Pierre Lindenbaum
161k
```
écho \${PWD}
```
<!-- where is Brian Brian is in the kitchen -->
Comment: featureCounts output summary assigned value higher than uniquely mapped reads fr
by
i.sudbery
19k
What is the output of `samtools flagstat`?
Traffic: 2500 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6