How to visualize/predict the final transcript from Delly output?
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9 days ago
simplitia ▴ 130

HI I have a Delly output for an inversion event. The gene is on chromosome 5 and it is on the negative strand. I'm trying to visualize how this will look as a transcript and I have a difficult time visualizing this. The output is

POS-1 149,505,056 STRAND-1 +

POS-2 149,505,411 STRAND-2 -

POS-3 149,505,057 STRAND-3 -

POS-4 149,505,412 STRAND-4 +

enter image description here

So to visulize this I want to know what which position 2 position should I use? My logic is that it looks 2&3 are flipped since 4 and 1 are on the + end? thanks in advance!

WGS DELLY • 182 views
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