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9 days ago
simplitia
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130
HI I have a Delly output for an inversion event. The gene is on chromosome 5 and it is on the negative strand. I'm trying to visualize how this will look as a transcript and I have a difficult time visualizing this. The output is
POS-1 149,505,056 STRAND-1 +
POS-2 149,505,411 STRAND-2 -
POS-3 149,505,057 STRAND-3 -
POS-4 149,505,412 STRAND-4 +
So to visulize this I want to know what which position 2 position should I use? My logic is that it looks 2&3 are flipped since 4 and 1 are on the + end? thanks in advance!