How do I set up dim value in "RunTCA"
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4 months ago
mnx0723 • 0

I am analyzing scRNA data using Seurat. I'm difficult to determine an appropriate dim value.

merged_seurat_filtered <- RunTSNE(merged_seurat_filtered, dims = 1:35, reduction = "integrated.cca")

What are the commonly used values? Is there a clear standard for determining the value?

single-cell • 251 views
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