single cell RNA analysis in python
0
0
Entering edit mode
12 months ago
sooni ▴ 20

Hello.

I am practicing single cell sequence analysis using Python.

After loading the h5 file using the 'sc.read_10x_h5' function, I ran the code using the 'sc.pp.filter_cells' and 'sc.pp.filter_genes' functions, and no error occurred. By the way, there is no var content of data. There are only column names such as gene_ids and feature_type, and there is no content in each column. It is like the picture below.

enter image description here

When analyzed in R with the same data, gene_ids were displayed as 'chr1: 44959708-45072070'. Is the reason why gene_ids don't appear in python related to this?

How can I solve it? Please help me.

cell single python • 377 views
ADD COMMENT

Login before adding your answer.

Traffic: 1077 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6