Seurat - LoadLoom Error: missing values are not allowed in subscripted assignments of data frames
0
0
Entering edit mode
2.5 years ago
mbk0asis ▴ 680

Hi~

I'm trying to read a loom file into Seurat, but having an error.

Here's a code I used in the below.

> toti <- LoadLoom("directory/GSE145609_Pre_implantation_ESCs_embryo_data.loom")

Reading in /matrix
Storing /matrix as counts
Saving /matrix to assay 'RNA'
Error in `[<-.data.frame`(`*tmp*`, names.intersect, i[index], value = c(`0610005C13Rik` = 0L,  : 
  missing values are not allowed in subscripted assignments of data frames

I also tried Connect --> as.Seurat but still got the same error.

Can someone tell me what the problem is here?

Thank you!

loom Seurat • 907 views
ADD COMMENT
0
Entering edit mode

I am also having this problem. Let me know if anyone has a solution.

ADD REPLY

Login before adding your answer.

Traffic: 2635 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6