Hi,
I can load a CRAM file from the command line while renaming the track on the fly, like so:
igv --genome my_genome --name my_track my_cram.cram
my_genome
is a custom built genome file that takes quite a while to load. I'd like to run an IGV batchfile for ~100 samples, and starting igv for each of them is a waste of time. I'd like to start IGV once, load the genome and then load and unload the CRAMs as required. However, I'm unable to find a batch command that lets me rename the track after I load
the file.
Does anyone know how I can load
a data file and have the track be named something else? Can I load track_name=data_file
or something like that?