Co-evolutional programs, co-evolution

Question

[doramora]

Hello! Can you plese help me to find somehow programs connected with co-evolution? Or can you name programs you use itself? I'm really interested in this topic, mostly about protein co-evolution, but gene co-evolutional programs can also be really helpful!

Thank you!

[4galaxy77]

http://csbg.cnb.csic.es/rev_coevol_nrg/

[doramora]

Thank you very much!

Answer 1

[Mensur Dlakic]

Almost all modern predictors for protein residue contact maps utilize the concept of covariance:

• https://github.com/psipred/psicov
• https://github.com/soedinglab/CCMpred
• https://rostlab.org/owiki/index.php/FreeContact
• https://evcouplings.org/
• https://github.com/gjoni/trRosetta
• http://gremlin.bakerlab.org/
• https://github.com/multicom-toolbox/DNCON2

The list is not exhaustive.