Hi:
I am running RNA-seq analysis. I met an error in the step of extraction features and map symbols to genes. My running code is:
library(GenomicFeatures)
library(TxDb.Mmusculus.UCSC.mm10.knownGene)
TxDb <- TxDb.Mmusculus.UCSC.mm10.knownGene
library(ASpli)
features <- binGenome(TxDb)
symbols <- data.frame(row.names = genes(TxDb),
symbol = paste(genes(TxDb)))*
the occurring error is:
symbols <- data.frame(row.names = genes(TxDb),
+ symbol = paste(genes(TxDb)))
Error in data.frame(row.names = genes(TxDb), symbol = paste(genes(TxDb))) :
duplicate row.names: chr4:61224307-61674094:-, chr17:34145416-34160229:+, chr9:44101770-44109187:+, chr1:133309823-133329722:+, chr1:88103257-88220002:+
What should I correct?
Cai
Hi Guys:
I am sorry to have so many errors. When I put the command : "features <- binGenome (TxDb, geneSymbols = symbols)", I got an error like this:
What does that mean?
Thank you,
Cai