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5.2 years ago
Expert
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10
There are 6 controls and 6 treatment variables in a dataset. I used these command first:
mydata <- read.delim(".csv", header = TRUE, sep=",", stringsAsFactors = FALSE, row.names = 1)
targets <- data.frame(fileName=colnames(mydata)[1:12], Group=rep(c("Control" , "Treatment"), each= 6))
I want to filter for remove low counts, But in the same table this filtering will be:
control of %20 <1 , treatment of %20 <1 separately.
I could not filter in the same table.
Can you help me? Thank you.
A. You won't get a reply when people don't understand what you're asking B. Don't use FPKM
That sentence as it is written doesn't make sense at all. Please elaborate, and it may be helpful to include examples.