bash loop to align 366 RNAseq samples in individual folders
0
0
Entering edit mode
6.3 years ago
ATCG ▴ 380

Hi, I have 366 RNAseq samples, reads for each sample are located in individual folders with the following name structure:SAME-DIFFERENT. I would like to write a loop to align all samples using the STAR aligner. Any help is deeply appreciated.

RNA-Seq Bash Unix STAR alignment • 1.6k views
ADD COMMENT
1
Entering edit mode
ADD REPLY

Login before adding your answer.

Traffic: 2008 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6