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Showing :
questions
38
votes
24
replies
1.9k
views
10 follow
NGS forensics: how to know if data is fabricated
fastq
STAR
NGS
Illumina
updated 4 days ago by
i.sudbery
19k • written 6 days ago by
noodle
▴ 580
3
votes
3
replies
515
views
Free/open source 23andme-like analysis
SNPs
genomics
NGS
VCF
updated 14 days ago by
swbarnes2
14k • written 15 days ago by
noodle
▴ 580
3
votes
10
replies
660
views
Piping samtools to R
R
NGS
bash
samtools
17 days ago by
noodle
▴ 580
2
votes
1
reply
336
views
GIS overlay for environmental samples from NCBI
NCBI
environmental
SRA
GIS
ArcPro
6 weeks ago by
noodle
▴ 580
6
votes
7
replies
739
views
cutadapt not trimming all adapters in PE Illumina sequencing
NGS
Illumina
cutadapt
6 weeks ago by
noodle
▴ 580
1
vote
0
replies
254
views
Visualize and explore eventalign data against reference
igv
minimap
nanopolish
nanopore
ngs
5 months ago by
noodle
▴ 580
5
votes
5
replies
511
views
SP500 useable read lengths
Illumina
NovaSeq
NGS
updated 6 months ago by
GenoMax
142k • written 6 months ago by
noodle
▴ 580
1
vote
3
replies
504
views
Complexity curve for PE fastq files
complexity
fastq
updated 6 months ago by
Brian Bushnell
20k • written 6 months ago by
noodle
▴ 580
0
votes
3
replies
498
views
cutadapt 'cut_prefix' substring
cutadapt
6 months ago by
noodle
▴ 580
0
votes
0
replies
272
views
Pileup of inner distance for PE reads
picard
samtools
pileup
RNA-seq
updated 9 months ago by
Ram
43k • written 9 months ago by
noodle
▴ 580
17
votes
9
replies
7.1k
views
6 follow
T2T-CHM13 "complete" human genome gff/gtf annotation file
genomics
updated 12 months ago by
GenoMax
142k • written 2.9 years ago by
noodle
▴ 580
0
votes
3
replies
562
views
pileup consolidation tool
RNAseq
pileup
jacusa
samtools
15 months ago by
noodle
▴ 580
0
votes
0
replies
342
views
Table summary for SNP linkages from same read
NGS
SNP
RNAseq
15 months ago by
noodle
▴ 580
4
votes
3
replies
723
views
create 'negative' bed annotation from bed
bed
gtf
gff
updated 17 months ago by
Ram
43k • written 17 months ago by
noodle
▴ 580
3
votes
1
reply
511
views
LSF bsub SSUSP job stdout
IBM
LSF
bsub
18 months ago by
noodle
▴ 580
5
votes
3
replies
878
views
Explanation of BAM compression levels
compression
BAM
updated 18 months ago by
LChart
3.9k • written 18 months ago by
noodle
▴ 580
2
votes
3
replies
841
views
picard CollectRnaSeqMetrics gene coverage
picard
gatk
CollectRnaSeqMetrics
19 months ago by
noodle
▴ 580
0
votes
0
replies
357
views
RSamtools get picard tags
RSamtools
samtools
R
RStudio
updated 10 months ago by
Ram
43k • written 20 months ago by
noodle
▴ 580
0
votes
0
replies
380
views
16S (18S) rRNA primer design
taxonomy
primer
design
mopo16s
24 months ago by
noodle
▴ 580
0
votes
0
replies
457
views
RSEM gff 'parent' field
RNAseq
transcriptomics
RSEM
2.5 years ago by
noodle
▴ 580
2
votes
11
replies
2.4k
views
Convert transcriptomic bam to genomic bam
genome
bisulfite
bam
transcriptome
2.5 years ago by
noodle
▴ 580
0
votes
2
replies
1.2k
views
AlphaFold on AWS metrics
AlphaFold
AWS
2.6 years ago by
noodle
▴ 580
0
votes
0
replies
484
views
STAR bisulfite mapping
STAR
bisulfite
RNAseq
2.6 years ago by
noodle
▴ 580
0
votes
0
replies
563
views
Additional nanopore barcodes for RNA long reads
RNAseq
NGS
nanopore
2.6 years ago by
noodle
▴ 580
4
votes
3
replies
1.2k
views
UCSC MySQL access
UCSC
MySQL
updated 2.6 years ago by
Luis Nassar
▴ 650 • written 3.4 years ago by
noodle
▴ 580
2
votes
4
replies
1.1k
views
convert genomic bigWig file to transcriptome space
bigWig
bw
2.7 years ago by
noodle
▴ 580
0
votes
0
replies
445
views
Lifemap (phylogeny plot) custom display
taxonmy
phylogeny
lifemap
2.7 years ago by
noodle
▴ 580
0
votes
0
replies
483
views
IGV add contig/chr to genome file within session
genome
IGV
bam
alignment
2.8 years ago by
noodle
▴ 580
0
votes
0
replies
558
views
adding annotations to ggmsa() in R
R
ggplot
cran
msa
ggmsa
2.9 years ago by
noodle
▴ 580
0
votes
2
replies
727
views
system commands from R containing single and double quotes
R
bash
3.2 years ago by
noodle
▴ 580
1
vote
1
reply
657
views
PDB glossary for three letter codes
PDB
cif
R
bio3d
Rpdb
3.1 years ago by
noodle
▴ 580
13
votes
15
replies
6.5k
views
NCBI SRA AWS AMI
SRA
NCBI
AWS
S3
3.3 years ago by
noodle
▴ 580
3
votes
7
replies
4.4k
views
bwa mem -R (RGline) format for DNBseq fastq
DNBseq
bwa
bwa mem
WGS
fastq
updated 3.6 years ago by
xxa
• 0 • written 4.7 years ago by
noodle
▴ 580
1
vote
3
replies
1.1k
views
NCBI e-utilities: timeout and restart
NCBI
esearch
esummary
efetch
E-utilities
4.5 years ago by
noodle
▴ 580
3
votes
14
replies
1.7k
views
XML from entrez not formatted correctly
rentrez
rXML
entrez
R
XML
4.5 years ago by
noodle
▴ 580
0
votes
0
replies
1.1k
views
JGI IMG/M bulk download to AWS S3 bucket
JGI
IMG
IMG/M
Metagenomics
4.6 years ago by
noodle
▴ 580
0
votes
4
replies
1.1k
views
GUIDEseq data links dead in github
GUIDEseq
github
Cas9
CRISPR
guideseq
4.6 years ago by
noodle
▴ 580
1
vote
0
replies
835
views
CRISPR off-target validation with GUIDEseq
Cas9
GUIDEseq
CIRCLEseq
CRISPR
4.7 years ago by
noodle
▴ 580
4
votes
12
replies
3.2k
views
PacBio file type from NCBI run download
pacbio
ncbi
sra
4.7 years ago by
noodle
▴ 580
1
vote
1
reply
806
views
EBI MGnify metadata database for local query
EBI
MGnify
EBI MGnify
updated 4.8 years ago by
Biostar
20 • written 4.9 years ago by
noodle
▴ 580
7
votes
3
replies
3.5k
views
mclapply on AWS
R
CRAN
parallel
mclapply
AWS
4.8 years ago by
noodle
▴ 580
1
vote
1
reply
1.5k
views
Latest https for SRAmetadb.sqlite db
SRA
NCBI
SRAmetadb
5.0 years ago by
noodle
▴ 580
42 results • Page
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