Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : questions
0
votes
0
replies
311
views
RRBS fastq - biased per base sequence content
fastqc rrbs
11 months ago by mbk0asis ▴ 680
1
vote
2
replies
1.4k
views
WGCNA - consensus analysis - cutreeStatic - no samples selected
RNA-Seq WGCNA
updated 21 months ago by • 0 • written 3.8 years ago by ▴ 680
0
votes
1
reply
2.2k
views
WGCNA blockwiseConsensusModules : number of colors and objects in dendrogram don't match
wgcna blockwiseConsensusModules
updated 23 months ago by • 0 • written 4.4 years ago by ▴ 680
0
votes
1
reply
906
views
Seurat - LoadLoom Error: missing values are not allowed in subscripted assignments of data frames
loom Seurat
updated 10 months ago by • 0 • written 2.5 years ago by ▴ 680
4
votes
2
replies
843
views
DESeq2: impact of number of expressed genes in differential expression analysis
genes number of DESeq2 expressed
2.8 years ago by mbk0asis ▴ 680
6
votes
6
replies
1.1k
views
Divide by a specified member in a group in R
R dplyr
updated 2.9 years ago by ★ 2.5k • written 2.9 years ago by ▴ 680
0
votes
2
replies
2.4k
views
FindIntegrationAnchors returs 0 anchor after filtering
seurat dataintegration FindIntegrationAnchors
3.1 years ago by mbk0asis ▴ 680
0
votes
3
replies
830
views
how to create mutant DNA sequence
mutation in silico mutagenesis
3.4 years ago by mbk0asis ▴ 680
4
votes
2
replies
922
views
GSVA example leukemia returns a 'NULL' object
gsva RNA-Seq
updated 3.7 years ago by 87k • written 3.7 years ago by ▴ 680
0
votes
2
replies
1.8k
views
Seurat3 DimPlot inconsistency
RNA-Seq Seurat Seurat3
3.8 years ago by mbk0asis ▴ 680
3
votes
8
replies
1.4k
views
Odd DESeq2 results
RNA-Seq DESeq2
3.8 years ago by mbk0asis ▴ 680
7
votes
3
replies
1.2k
views
biomaRt::getSequence - Invalid type argument
biomaRt R
updated 15 days ago by 43k • written 3.9 years ago by ▴ 680
5
votes
5
replies
2.6k
views
<DESeqDataSet>[i,] index out of bounds - subsetting DESeqDataSet
DESeq
3.9 years ago by mbk0asis ▴ 680
3
votes
4
replies
2.7k
views
deepTools : No module named cycler
deepTools python cycler
3.9 years ago by mbk0asis ▴ 680
1
vote
7
replies
5.2k
views
plotProfile (deepTools) generated a peak on gene body region
deepTools plotProfile
updated 4.0 years ago by ▴ 50 • written 6.4 years ago by ▴ 680
3
votes
3
replies
3.5k
views
mapIDs (AnnotationDBi) returns shorter list of IDs than input IDs
AnnotationDBi mapIDs R AnnotationDBI
4.1 years ago by mbk0asis ▴ 680
5
votes
4
replies
1.5k
views
Normalizing NGS samples expected to have different total reads
NGS Normalization
4.3 years ago by mbk0asis ▴ 680
9
votes
3
replies
3.7k
views
fGSEA result to csv
fGSEA RNA-Seq GSEA
updated 4.4 years ago by ▴ 920 • written 4.4 years ago by ▴ 680
1
vote
2
replies
1.8k
views
View gene list in GAGE enriched terms
gage gsea gene ontology
updated 4.9 years ago by • 0 • written 6.0 years ago by ▴ 680
1
vote
3
replies
2.2k
views
How can I access the consensus sequences of all human ERVs from Dfam?
dfam erv
updated 5.2 years ago by ▴ 240 • written 6.1 years ago by ▴ 680
2
votes
4
replies
1.0k
views
1000 genome project - difference between "0" and "0|0"
1000 genome project genotype vcf
updated 5.7 years ago by 5.7k • written 5.7 years ago by ▴ 680
0
votes
0
replies
1.2k
views
Meaning of mfold upper limit?
mfold macs2 ChIP-Seq
5.7 years ago by mbk0asis ▴ 680
1
vote
1
reply
1.9k
views
how to interpret imputed/phased VCF?
vcf imputed phased
5.8 years ago by mbk0asis ▴ 680
3
votes
2
replies
2.8k
views
deepTools - change line colors in profile plots above a heatmap
deeptools profile plot heatmap
updated 5.8 years ago by 104k • written 5.8 years ago by ▴ 680
0
votes
1
reply
1.1k
views
Can I combine sessions saved in UCSC genome browser?
UCSC genome browser sessions
5.9 years ago by mbk0asis ▴ 680
0
votes
3
replies
1.8k
views
Repeat names with "dup" at the end in repeatMasker GTF (UCSC) file?
repeatMasker UCSC
updated 6.1 years ago by ▴ 580 • written 6.1 years ago by ▴ 680
0
votes
0
replies
730
views
CpG distribution in reads with variable length
pattern count variable length
6.2 years ago by mbk0asis ▴ 680
0
votes
0
replies
1.1k
views
Repetitive region expression in TCGA RNA-seq data?
TCGA repetitive regions
6.3 years ago by mbk0asis ▴ 680
0
votes
0
replies
1.4k
views
Can we estimate actual copy number using Segment_means in TCGA level 3 CNV data?
TCGA CNV copy number
6.4 years ago by mbk0asis ▴ 680
2
votes
3
replies
3.7k
views
How to calculate polygenic hazard score (PHS)?
plygenic hazard score Alzheimer statistics
updated 6.4 years ago by • 0 • written 7.1 years ago by ▴ 680
0
votes
1
reply
1.0k
views
Extraction of every n-th and m-th columns
bash command
updated 6.5 years ago by 35k • written 6.5 years ago by ▴ 680
22
votes
16
replies
16k
views
9 follow
fasta - reverse complement sequence
fasta reverse complement bash
updated 6.6 years ago by • 0 • written 8.0 years ago by ▴ 680
7
votes
2
replies
2.2k
views
save plots in for loop
R for loop jpeg grep
6.9 years ago by mbk0asis ▴ 680
0
votes
3
replies
3.7k
views
coxph error : missing value where TRUE/FALSE needed
survival analysis coxph
updated 7.0 years ago by 5.7k • written 7.0 years ago by ▴ 680
0
votes
0
replies
1.2k
views
How to predict onset age using polygenic hazard score?
polygenic hazard score Alzheimer
7.0 years ago by mbk0asis ▴ 680
0
votes
0
replies
2.3k
views
TCGAbiolinks - GDCdownload error
TCGAbiolinks R
updated 13 months ago by 43k • written 7.1 years ago by ▴ 680
11
votes
7
replies
4.9k
views
deepTools cluster information?
deepTools kmeans clustering
updated 7.2 years ago by 104k • written 7.2 years ago by ▴ 680
0
votes
3
replies
1.7k
views
intersectBed - multiple intersections
bedtools intersectBed
updated 7.3 years ago by ▴ 180 • written 7.3 years ago by ▴ 680
10
votes
5
replies
1.7k
views
Inserting delim between numbers and strings in bash
bash
updated 7.4 years ago by ▴ 40 • written 7.4 years ago by ▴ 680
2
votes
1
reply
1.9k
views
Allele specific expression (ASE) using unfiltered reads from RNA-seq data?
RNA-Seq allele-specific-expression ASE
updated 7.4 years ago by 20 • written 7.8 years ago by ▴ 680
1
vote
2
replies
2.3k
views
Normalization necessary for TCGA 450K data?
450K normalization
updated 7.6 years ago by 13k • written 7.6 years ago by ▴ 680
4
votes
9
replies
2.2k
views
How to split numbers and strings?
split
updated 21 months ago by 43k • written 8.3 years ago by ▴ 680
5
votes
4
replies
3.1k
views
GAGE - eg2sym (ID conversion)
GAGE RNA-Seq GSEA KEGG
updated 7.7 years ago by ★ 2.6k • written 7.7 years ago by ▴ 680
4
votes
2
replies
2.0k
views
Where can I get bovine 'kegg.gs' in R?
kegg.gs bovine RNA-Seq
updated 7.9 years ago by 7.5k • written 7.9 years ago by ▴ 680
5
votes
5
replies
3.5k
views
awk : if length to a pattern at column 2 is less than 5
awk regex
updated 8.0 years ago by 14k • written 8.0 years ago by ▴ 680
4
votes
4
replies
2.1k
views
new line to tab in every second column
linux bash
updated 8.0 years ago by 11k • written 8.0 years ago by ▴ 680
23
votes
2
replies
9.7k
views
1/2 in VCF genotype field?
vcf zygosity
updated 8.0 years ago by 14k • written 8.0 years ago by ▴ 680
8
votes
5
replies
7.5k
views
how to substitue Nth character in a string using linux commands
linux commands
updated 8.1 years ago by ★ 4.0k • written 8.1 years ago by ▴ 680
3
votes
6
replies
12k
views
overlapping texts (plot.PCA in FactoMineR)
R factominer
8.1 years ago by mbk0asis ▴ 680
3
votes
3
replies
2.9k
views
How to find out the mismatch position from MUSCLE or CLUSTALW output?
muscle mismatch-finding
updated 21 months ago by 43k • written 8.4 years ago by ▴ 680
63 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6