Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
2
votes
1
reply
379
views
Answer:
Answer: How to find what is the most significantly modulated gene in GEO2R analysis?
9 weeks ago by
ahmad mousavi
▴ 800
2
votes
2
replies
385
views
Need a spatial transcriptomics cancer data
NGS
scRNA-Seq
Single-Cell
updated 11 weeks ago by
jv
★ 1.8k • written 11 weeks ago by
ahmad mousavi
▴ 800
0
votes
1
reply
442
views
Comment:
Comment: average of one column for each category of another column
11 weeks ago by
ahmad mousavi
▴ 800
0
votes
1
reply
847
views
Comment:
Comment: What are the steps for Germline and Somatic CNV detection using CNVkit?
12 weeks ago by
ahmad mousavi
▴ 800
0
votes
1
reply
600
views
Answer:
Answer: RNAseq analysis: how to add new gene into an existing worm based reference
3 months ago by
ahmad mousavi
▴ 800
9
votes
2
replies
513
views
Batch effect correction between Bulk RNA-Seq and scRNA-Seq's clusters
rna-seq
scrna-seq
deg
deseq2
updated 5 months ago by
LauferVA
4.2k • written 5 months ago by
ahmad mousavi
▴ 800
0
votes
0
replies
804
views
Answer:
Answer: STAR ALIGNMENT
5 months ago by
ahmad mousavi
▴ 800
0
votes
0
replies
847
views
Comment:
Comment: What are the steps for Germline and Somatic CNV detection using CNVkit?
5 months ago by
ahmad mousavi
▴ 800
0
votes
1
reply
847
views
Comment:
Comment: What are the steps for Germline and Somatic CNV detection using CNVkit?
5 months ago by
ahmad mousavi
▴ 800
2
votes
6
replies
847
views
What are the steps for Germline and Somatic CNV detection using CNVkit?
cnv
cnvkit
updated 12 weeks ago by
Ram
43k • written 5 months ago by
ahmad mousavi
▴ 800
0
votes
0
replies
2.9k
views
Answer:
Answer: Can we compare bulk RNAseq samples and single cell rnaseq clusters?
9 months ago by
ahmad mousavi
▴ 800
0
votes
0
replies
478
views
Comment:
Comment: Estimating sample size from bulk RNAseq data
9 months ago by
ahmad mousavi
▴ 800
0
votes
1
reply
481
views
How to add annotation columns with specific colors to the heatmap?
R
heatmap
RNA-seq
updated 10 months ago by
Ram
43k • written 10 months ago by
ahmad mousavi
▴ 800
0
votes
1
reply
1.2k
views
Answer:
Answer: Variant identified, What next?
20 months ago by
ahmad mousavi
▴ 800
0
votes
0
replies
465
views
Comment:
Comment: Carp mitochondrial genome
20 months ago by
ahmad mousavi
▴ 800
1
vote
0
replies
736
views
Answer:
Answer: BEDtools merge output
20 months ago by
ahmad mousavi
▴ 800
0
votes
0
replies
548
views
Answer:
Answer: Does it make sense to analyze snRNA-seq data with low nUMI per gene?
20 months ago by
ahmad mousavi
▴ 800
1
vote
0
replies
2.2k
views
Answer:
Answer: scRNA-seq: Which is the best method for computing the % of similarity between tw
20 months ago by
ahmad mousavi
▴ 800
1
vote
1
reply
2.3k
views
Answer:
Answer: Fold change cutoff for downregulated genes
21 months ago by
ahmad mousavi
▴ 800
1
vote
0
replies
1.6k
views
Answer:
Answer: Skills for industry career in bioinformatics
21 months ago by
ahmad mousavi
▴ 800
0
votes
1
reply
738
views
Answer:
Answer: Expected runtimes for GATK variant calling?
21 months ago by
ahmad mousavi
▴ 800
2
votes
0
replies
941
views
Answer:
Answer: Bulk RNA-seq with genome but without gene annotation
22 months ago by
ahmad mousavi
▴ 800
3
votes
0
replies
497
views
Answer:
Answer: Using gtf file to get gene positions
22 months ago by
ahmad mousavi
▴ 800
0
votes
1
reply
59k
views
Answer:
Answer: What Are The Most Common Stupid Mistakes In Bioinformatics?
22 months ago by
ahmad mousavi
▴ 800
1
vote
1
reply
483
views
Barcode whitelist in seurat
scRNA
ngs
scRNA-seq
updated 22 months ago by
cpad0112
21k • written 22 months ago by
ahmad mousavi
▴ 800
0
votes
0
replies
743
views
Comment:
Comment: How to demultiplex single cell rna-seq based on SNP mutation?
22 months ago by
ahmad mousavi
▴ 800
1
vote
0
replies
1.2k
views
Answer:
Answer: What's the best 3rd party software for doing analysis on 10X Genomics ATAC-seq d
23 months ago by
ahmad mousavi
▴ 800
0
votes
1
reply
1.3k
views
Comment:
Comment: I don't understand the HDF5 file from 10x genomics scRNAseq
23 months ago by
ahmad mousavi
▴ 800
0
votes
2
replies
743
views
How to demultiplex single cell rna-seq based on SNP mutation?
NGS
RNA-SEQ
singlecell
scRNA-seq
22 months ago by
ahmad mousavi
▴ 800
16
votes
5
replies
13k
views
6 follow
Tutorial:
Easy way to do GO enrichment in R
enrichr
RNA-Seq
gene
R
updated 13 months ago by
Ram
43k • written 6.4 years ago by
ahmad mousavi
▴ 800
4
votes
3
replies
5.3k
views
How to compare two Seurat object (sample) in order to find top markers?
scRNA-SEQ
NGS
rna-seq
updated 2.4 years ago by
Ondina
▴ 100 • written 2.5 years ago by
ahmad mousavi
▴ 800
0
votes
0
replies
1.0k
views
Comment:
Comment: Finding cluster specific markers in the Seurat object
2.5 years ago by
ahmad mousavi
▴ 800
0
votes
2
replies
1.0k
views
Finding cluster specific markers in the Seurat object
sequencing
seurat
scRNA
scRNA-SEQ
2.5 years ago by
ahmad mousavi
▴ 800
0
votes
1
reply
6.2k
views
Comment:
Comment: Which trajectory method is better !?
2.6 years ago by
ahmad mousavi
▴ 800
5
votes
4
replies
6.2k
views
Which trajectory method is better !?
cell
monocle3
monocle
scRNA-SEQ
single
RNA-SEQ
2.6 years ago by
ahmad mousavi
▴ 800
0
votes
0
replies
585
views
How to merge Bulk ATAC-SEQ with scATAC-SEQ result?
atac
scATAC
2.6 years ago by
ahmad mousavi
▴ 800
0
votes
0
replies
1.1k
views
Remove cells from Seurat object based on gene expression of makers
rnaseq
singlecell
seurat
scrna
2.9 years ago by
ahmad mousavi
▴ 800
0
votes
2
replies
2.1k
views
Comment:
Comment: How can I use log2 RPM data(RNA-seq) to find differentially expressed genes?
3.0 years ago by
ahmad mousavi
▴ 800
1
vote
1
reply
860
views
Rare cell population in single cell ATAC-Seq
atac-seq
atac
updated 3.0 years ago by
heskett
▴ 110 • written 3.0 years ago by
ahmad mousavi
▴ 800
0
votes
0
replies
1.2k
views
No peaks found in Signac's FindMarker
seurat
atac-seq
Signac
atac
singlecell
3.0 years ago by
ahmad mousavi
▴ 800
0
votes
0
replies
815
views
Answer:
A: SNP index definition
3.4 years ago by
ahmad mousavi
▴ 800
0
votes
3
replies
2.9k
views
How to handle DNA methylation duplication in Bismark?
sequencing
alignment
updated 3.6 years ago by
Biostar
20 • written 6.3 years ago by
ahmad mousavi
▴ 800
1
vote
5
replies
2.1k
views
How to make annotation (GFF/GTF) for transcriptome?
RNA-Seq
Assembly
sequencing
alignment
updated 3.9 years ago by
Juke34
8.5k • written 3.9 years ago by
ahmad mousavi
▴ 800
0
votes
0
replies
1.7k
views
Comment:
C: Bacterial RNAseq - Help for beginner
4.0 years ago by
ahmad mousavi
▴ 800
0
votes
2
replies
1.7k
views
Answer:
A: Bacterial RNAseq - Help for beginner
4.0 years ago by
ahmad mousavi
▴ 800
0
votes
1
reply
482
views
How to make comparison between human and mouse pathways for a gene list?
RNA-Seq
4.0 years ago by
ahmad mousavi
▴ 800
20
votes
7
replies
6.4k
views
Tutorial:
Showing up and down regulated GO and pathway using enrichR and ggplot2
ggplot2
RNA-Seq
R
updated 13 months ago by
Ram
43k • written 5.5 years ago by
ahmad mousavi
▴ 800
0
votes
0
replies
12k
views
Comment:
C: How to make k-means clustering plot for relative expression?
4.0 years ago by
ahmad mousavi
▴ 800
0
votes
0
replies
3.3k
views
Comment:
C: How to make GFF file based on assembled transcriptome and genome sequence?
4.1 years ago by
ahmad mousavi
▴ 800
0
votes
1
reply
3.3k
views
Comment:
C: How to make GFF file based on assembled transcriptome and genome sequence?
4.1 years ago by
ahmad mousavi
▴ 800
113 results • Page
1 of 3
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6