Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
116,791 results • Page
3 of 2336
Sort: Rank
Rank
Views
Votes
Replies
0
votes
1
reply
228
views
Subsetting and merging back Seurat Object brings different results
Seurat
4 days ago by
Bine
▴ 60
0
votes
0
replies
144
views
Job:
Postdoctoral Position in Bioinformatics - Mainz, Germany
NGS
Genomics
Post-doc
R-loops
updated 4 days ago by
Ram
43k • written 5 days ago by
4r-rtg
• 0
1
vote
1
reply
139
views
Discrepancy in read counts from fastq
downsampling
fastq
updated 4 days ago by
Ram
43k • written 5 days ago by
marco.barr
▴ 90
0
votes
0
replies
96
views
Successfully identified and Masked rpeats using RM. What Next?
sequence
annotation
repeatmasker
illumina
assembly
5 days ago by
Vijith
▴ 30
9
votes
11
replies
528
views
6 follow
Bacterial plasmid analysis
bacteria
plasmid
wgs
hybridassembly
sequencing
31 minutes ago by
nicole.kavanagh
• 0
0
votes
1
reply
279
views
Is there a way to increase the automatic label text size in Cytoscape?
Cytoscape
updated 5 days ago by
Scooter
▴ 280 • written 11 days ago by
avocado123
• 0
0
votes
0
replies
98
views
Combining Methylation Microarray data from different platforms
Microarray
DNA
EPIC
450K
Methylation
5 days ago by
James
▴ 10
0
votes
1
reply
588
views
Basic stats in hierfstat
Fst
stats
hierfstat
updated 5 days ago by
mdav
• 0 • written 18 months ago by
Zoe
• 0
1
vote
3
replies
239
views
Odd alignment question/finding
Alignment
updated 4 days ago by
barslmn
★ 2.1k • written 5 days ago by
poordumbsillyidiot
• 0
0
votes
1
reply
207
views
GATK won't produce figures while analyzing covariates to generate 'recal_plots.pdf'
GATK
recalibration
updated 5 days ago by
GenoMax
142k • written 5 days ago by
mgranada3
▴ 30
0
votes
0
replies
99
views
Tassel 5 GBS: GBSSeqToTagDBPlugin producing empty database
GBS
Tassel5
5 days ago by
meck
• 0
0
votes
0
replies
124
views
Looking for the best way to interpret these data
RNA-seq
ontology
GO
updated 5 days ago by
Ram
43k • written 5 days ago by
Oscar
▴ 10
0
votes
7
replies
555
views
Post-imputation plot
michigan-imputation-server
quality-control
updated 4 days ago by
LChart
3.9k • written 7 days ago by
kl
▴ 10
0
votes
1
reply
222
views
How to find overlap of clusters in two seurat porject
clustering
seurat
updated 5 days ago by
Adam
▴ 30 • written 6 days ago by
J
• 0
1
vote
3
replies
309
views
DESeq2 processing problems
deseq2
R
updated 5 days ago by
ATpoint
82k • written 6 days ago by
jagdish7921
• 0
0
votes
1
reply
782
views
cnetplot category names are too long
clusterprofiler
RNA-Seq
enrichplot
cnetplot
updated 4 days ago by
Ram
43k • written 2.7 years ago by
carov
• 0
0
votes
1
reply
152
views
Mutect2 for mitochondria variant discovery
mutect2
mitochondria
updated 5 days ago by
Ram
43k • written 5 days ago by
ernestine.kubi
• 0
0
votes
0
replies
106
views
Tools to circularise the ion torrent bacterial genome assembly
iontorrent
bacteria
circularise
5 days ago by
VITALA
• 0
1
vote
2
replies
252
views
POSSUM not working due to incompatible pssm file
fasta
pse-pssm
pssm
POSSUM
5 days ago by
rianna.collins
• 0
0
votes
1
reply
186
views
Alternatives to metanalyisis. P integration. Horiztonal integration RNA-seq
rna-seq
updated 5 days ago by
i.sudbery
19k • written 6 days ago by
Edmond
• 0
0
votes
0
replies
145
views
What open-source tools can determine the coverage/completion of a pathway based on EC numbers?
metagenomics
metacyc
enzyme
pathway
genomics
6 days ago by
O.rka
▴ 710
0
votes
1
reply
681
views
after selecting specific GO terms to plot, cneplot is not showing any color for genes, GO terms and only showing lines without nodes.
cneplot
updated 6 days ago by
Ram
43k • written 6 days ago by
Dr Huma Naz
• 0
2
votes
2
replies
275
views
p-value in CIBERSORT
CIBERSORT
p-value
6 days ago by
michelafrancesconi9
▴ 20
0
votes
5
replies
377
views
Telescope issue
Telescope
RNA-seq
updated 5 days ago by
GenoMax
142k • written 6 days ago by
eleven11
• 0
5
votes
6
replies
525
views
Programmatically retrieving positions of protein active site residues
Uniprot
PDB
Proteins
updated 6 days ago by
me
▴ 760 • written 7 days ago by
Mariana
▴ 40
1
vote
1
reply
234
views
Adjust pvalue in R with different approach give me all different outcome
statistics
R
p-value
updated 6 days ago by
Ram
43k • written 6 days ago by
Jonathan Yoou
▴ 60
1
vote
2
replies
292
views
Minimum RAM and Storage requirement for creating PSSM using ncbi-blast-2.2.30+-x64-linux
blast
pssm
5 days ago by
Nafi
• 0
1
vote
3
replies
282
views
What does 'bundle_uuid' refer to in this metadata sheet?
SRA
illumina
GEO
metadata
updated 6 days ago by
GenoMax
142k • written 6 days ago by
jeffrey.maurer.informatics
• 0
1
vote
3
replies
280
views
ERROR When Using Ensembl Plants Biomart Wget API
biomart
plant
ensembl
1 day ago by
Dora
▴ 10
0
votes
0
replies
167
views
News:
Goodbye, Slow Code? How BioNumpy can Redefine Python’s Role in Bioinformatics!
BioNumPy
Python
NumPy
updated 6 days ago by
Ram
43k • written 6 days ago by
Chakri
• 0
0
votes
1
reply
189
views
RNA editing sites based on DNA seq and RNA seq
RNA-editing
updated 5 days ago by
Adam
▴ 30 • written 6 days ago by
Ahiad Chen Zion
• 0
1
vote
5
replies
332
views
Introduce SNPs on FASTA
simulation
snps
haplotypes
pharmacogenetics
4 days ago by
Riccardo
▴ 10
0
votes
0
replies
138
views
barcode of TCR-sequencing
barcode
6 days ago by
yueli7
▴ 250
0
votes
0
replies
130
views
News:
Online course: Meta-analysis in R - last 2 seats left
Meta-Analysis
Statistics
R
updated 6 days ago by
Ram
43k • written 6 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
127
views
Somatic variant calling with Mutect2 using 2 matched-normals for one sample
cancer
mutect
variant-calling
GATK
somatic-variants
updated 6 days ago by
Ram
43k • written 6 days ago by
Alexandros
• 0
0
votes
1
reply
175
views
unable to get feature count results
featureCounts
updated 6 days ago by
Ram
43k • written 6 days ago by
Ravita
• 0
0
votes
3
replies
287
views
KEGG Pathways
r
RNA-seq
updated 6 days ago by
Ram
43k • written 6 days ago by
Sudip
• 0
4
votes
6
replies
3.9k
views
Taking the difference of two VCFs (or removing singletons)
genome
sequencing
singleton
SNP
filter
updated 6 days ago by
Andres
▴ 20 • written 9.6 years ago by
hermathena
▴ 40
0
votes
0
replies
135
views
Seurat object reductions (PCA, UMAP,..) after subsetting data
Seurat
6 days ago by
Bine
▴ 60
0
votes
1
reply
291
views
News:
FINAL CALL: 8th Berlin Summer School in NGS Data Analysis - Only a few last places available
DNA-seq
variant-calling
RNA-seq
illumina
transcriptomics
7 days ago by
David Langenberger
11k
0
votes
1
reply
192
views
Deseq2
Deseq2
updated 7 days ago by
Jack Tierney
▴ 360 • written 7 days ago by
Sudip
• 0
1
vote
1
reply
235
views
Polishing genome assembly
polishing
Nanopore
PacBio
updated 7 days ago by
Michael
54k • written 7 days ago by
Lissa Cruz Saavedra
• 0
5
votes
3
replies
283
views
6 follow
Integrate transcriptomic data and proteomics data.
OMICS
updated 7 days ago by
Lluís R.
★ 1.2k • written 7 days ago by
이민경[학생](대학원 융합의과학과)
• 0
2
votes
2
replies
204
views
MA plot of shrunken fold change
MA-plot
Deseq2
updated 7 days ago by
ATpoint
82k • written 7 days ago by
Sudip
• 0
1
vote
2
replies
229
views
Need help for downloading arabdopsis thaliana reference genome fasta file and gtf file
Arabidopsis-thaliana
gtf
reference-genome
updated 6 days ago by
Ram
43k • written 7 days ago by
Ravita
• 0
3
votes
3
replies
211
views
Gene Specific coverage from WGS data
linux
WGS
Bioinformatics
SARS
CoV2
3 hours ago by
Adyasha
• 0
0
votes
0
replies
116
views
human gut metagenome taxonomy profile table and KO profile table from big cohort
metagenome
gut
human
7 days ago by
fanglujing
▴ 60
0
votes
0
replies
134
views
Are some metagenomes too complex for MAGs?
metagenomics
metagenome
MAGs
assembly
7 days ago by
Jacob
• 0
0
votes
3
replies
745
views
Why cd-hit-est not work when sequence identity threshold<0.95?
genome
cluster
sequence
updated 7 days ago by
weidonglu
• 0 • written 21 months ago by
JZX
• 0
0
votes
4
replies
278
views
Perfom a Gene Ontology Analysis from GO terms txt file
RNA-Seq
GO
updated 7 days ago by
Ram
43k • written 7 days ago by
Hamtaro
▴ 50
116,791 results • Page
3 of 2336
Recent Votes
A: Sjdboverhang Option In Star
Comment: High Malat-1 expression in single cell data
Comment: Gene Specific coverage from WGS data
Answer: ATAC-Seq and RPKM
Answer: MSA and distance matrix in R
Comment: MSA and distance matrix in R
Comment: Which hg38 file?
Recent Locations •
All
India,
just now
Poland,
just now
Norway,
1 minute ago
Lugano,
2 minutes ago
Lyon,
3 minutes ago
United Kingdom,
5 minutes ago
United Kingdom,
6 minutes ago
Recent Awards •
All
Popular Question
to
anikcropscience
▴ 230
Popular Question
to
Omics data mining
▴ 260
Popular Question
to
JACKY
▴ 140
Popular Question
to
Scott McKay
▴ 30
Popular Question
to
A. Domingues
★ 2.7k
Scholar
to
LChart
3.9k
Popular Question
to
bhumm
▴ 140
Recent Replies
Answer: Converting Nebula Genomics Data to 23andMe Format
by
Michael
54k
Hi, Thank you for your contribution, here is your *free* code review: - This scenario is sort of ideal for a snakemake workflow and I th…
Comment: Comparative Analysis of Algorithms for Implementing the FM-Index: Correctness, C
by
qwertyuiop26
• 0
I'm sorry for any confusion or inconvenience. I'm seeking guidance on which search algorithms are used in the FM-index. I've done extensive…
Comment: Bacterial plasmid analysis
by
nicole.kavanagh
• 0
Hi Daria, I have downloaded pling and the other dependencies as recommended on your github page. I have tried to run the tool a few times …
Answer: Understanding STAR output (Aligned.out.sam file)
by
i.sudbery
19k
The insert size is measured from outermost edge of this read, to the outer most edge of its mate. Like, literally, start_second - start_fir…
Comment: Comparative Analysis of Algorithms for Implementing the FM-Index: Correctness, C
by
Michael
54k
So this is your exam question or assignment? Please understand that posting this here is not doing anyone any good. You are supposed to lea…
Answer: What is the proper way to identify the cell types of scRNAseq cluster?
by
ATpoint
82k
I will say that the proper way is the one that confidently identifies your celltypes. > optimal number of marker genes to consider. T…
Comment: How to compute TPM normalized values for TCGA miRNA data?
by
swbarnes2
14k
When everything is the same size, correcting for size is pointless. It doesn't change the numbers much at all.
Comment: Understanding STAR output (Aligned.out.sam file)
by
swbarnes2
14k
What do the alignments look like in IGV?
Comment: HCL database download
by
sooni
▴ 20
I solved the problem! Thanks!
Comment: Gene Specific coverage from WGS data
by
Adyasha
• 0
Thank you, here I am giving you some example , suppose I have bam files . 1.bam 2.bam 3.bam 4.bam now I want to see Spike gene coverage in …
Answer: Bioinformatics Analyst - Laboratory Medicine and Pathology
by
Xiaofen
• 0
I'm having a problem and I can't find the button to post, how do you post?
Comment: We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
by
MICOS
• 0
Contest question details: **To effectively address the accuracy and efficiency issues of clustering algorithms used for spatial transcript…
Comment: HCL database download
by
sooni
▴ 20
I would like to download top markers for each subpopulation data. Is there no way? It seems different from the DGE data.
Comment: Understanding STAR output (Aligned.out.sam file)
by
GenoMax
142k
Refer to SAM alignment format: https://samtools.github.io/hts-specs/SAMv1.pdf Check section 1.4.
Answer: Seeking Guidance on Identifying Mutations in DARs from ATAC Data in Cancer Genom
by
LChart
3.9k
Step 1: Go to TCGA in the GDC and open the Cohort Builder https://portal.gdc.cancer.gov/analysis_page?app=CohortBuilder&tab=general Step …
Traffic: 2555 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6