14 hours ago by
matteo.levorato
•
0
0
votes
4
replies
238
views
0
votes
2
replies
151
views
0
votes
1
reply
140
views
0
votes
0
replies
97
views
5
votes
16
replies
689
views
3 days ago by
Ruqaiya
•
0
0
votes
2
replies
197
views
38
votes
24
replies
1.9k
views
10 follow
0
votes
0
replies
87
views
0
votes
0
replies
93
views
updated 3 days ago by
GenoMax
142k
•
written 4 days ago by
aliraza3119
•
0
0
votes
1
reply
129
views
2
votes
7
replies
1.3k
views
6 follow
updated 4 days ago by
Gordon Smyth
★
7.1k
•
written 8 months ago by
Calum
▴
10
0
votes
1
reply
205
views
updated 3 days ago by
christopher medway
▴
450
•
written 4 days ago by
Tigran
•
0
2
votes
2
replies
193
views
0
votes
0
replies
109
views
3 days ago by
carlopecoraro2
★
2.5k
0
votes
8
replies
423
views
0
votes
9
replies
2.5k
views
6 follow
2
votes
5
replies
450
views
4 days ago by
ashaneev07
▴
20
0
votes
1
reply
166
views
0
votes
1
reply
746
views
3
votes
2
replies
288
views
0
votes
0
replies
120
views
updated 3 days ago by
dariober
14k
•
written 4 days ago by
rene.j.erhardt
▴
20
1
vote
3
replies
296
views
0
votes
0
replies
137
views
0
votes
0
replies
141
views
5 days ago by
Chris
▴
260
0
votes
1
reply
329
views
0
votes
2
replies
341
views
4
votes
3
replies
360
views
updated 5 days ago by
Arup Ghosh
3.2k
•
written 6 days ago by
chaco001
▴
40
1
vote
3
replies
381
views
updated 4 days ago by
Mensur Dlakic
★
27k
•
written 6 days ago by
O.rka
▴
710
0
votes
2
replies
253
views
4
votes
2
replies
298
views
3
votes
6
replies
2.0k
views
7 follow
0
votes
0
replies
565
views
4
votes
8
replies
645
views
4
votes
7
replies
684
views
7 follow
updated 5 days ago by
dsull
★
5.9k
•
written 9 days ago by
qudrat.nii
▴
10
19
votes
11
replies
14k
views
10 follow
3
votes
2
replies
330
views
3
votes
0
replies
201
views
updated 6 days ago by
Ram
43k
•
written 6 days ago by
Claire Watson
▴
60
0
votes
2
replies
281
views
updated 6 days ago by
Ram
43k
•
written 7 days ago by
The_PyPanda
▴
10
0
votes
0
replies
204
views
3
votes
3
replies
302
views
1
vote
0
replies
158
views
0
votes
0
replies
176
views
0
votes
0
replies
172
views
0
votes
0
replies
154
views
3
votes
3
replies
303
views
0
votes
0
replies
165
views
0
votes
0
replies
175
views
1
vote
1
reply
225
views
updated 7 days ago by
ATpoint
82k
•
written 7 days ago by
AaronJaime
•
0
0
votes
2
replies
294
views
Recent Votes
Recent Locations •
All
India, 1 minute ago
United States, 2 minutes ago
India, 7 minutes ago
China, 8 minutes ago
United States, 10 minutes ago
United States, 10 minutes ago
Canada, 12 minutes ago
Recent Awards •
All
Popular Question to
kuttibiotech2009
▴
30
Popular Question to
analyst
▴
30
Popular Question to
Shicheng Guo
★
9.4k
Popular Question to
Sasha
▴
840
Popular Question to
Buffo
★
2.4k
Popular Question to
yvonnehhe
•
0
Popular Question to
curious
▴
750
Recent Replies
Comment: HOMER on AWS
by
clairechung112
•
0
Hi. I guess it is solved by now, but as I did not find the answer immediately online, here is the answer I posted on a relevant question: h…
Answer: homer not configured properly
by
clairechung112
•
0
A late reply, but I just solved exactly the same error upon a request in the team. Please see if it helps in case anyone meets the same err…
Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
by
Chris Dean
▴
390
Was the spike-in a commercial product, e.g., from Zymo? Can you provide more information about what cells or DNA was spiked into your samp…
Comment: Bedtools merge minimum overlap?
by
Alex Reynolds
35k
Note that, in place of `sort-bed - | uniq -`, you can pass the `--unique` option to `sort-bed`.
The input is not strictly a BED6 file, but…
Comment: Post-imputation plot
by
LChart
3.9k
Imputation takes what? A day or two of compute time? Just re-do it.
Comment: How to access TCGA samples that were treated with a specific drug?
by
Qroid
▴
40
Thanks. Really appreciate your help with this. This site is such a great resource.
The methods aren't totally clear on how they're gettin…
Comment: How to access TCGA samples that were treated with a specific drug?
by
GenoMax
142k
It is possible that these drugs may not have been directly used in TCGA. Authors could have looked for mutations known to be acted on by th…
Comment: Does comparing two different groups to a common third group introduce bias in th
by
Qroid
▴
40
Are you thinking about a specific scenario? If so, can you provide more info? I think the basic answer is that, yes, your choice of group C…
Answer: Bedtools merge minimum overlap?
by
harold.smith.tarheel
★
4.9k
Bedtools [intersect][1] allows you to specify the fraction of overlap between two BED (or BAM) files using the F/f/r flags. You could split…
Comment: How to access TCGA samples that were treated with a specific drug?
by
Qroid
▴
40
Sorry, I should have been more specific. By "that list" I mean what's populated in the Therapeutic Agents tab when no filters are applied. …
Comment: Bedtools merge minimum overlap?
by
bk11
★
2.4k
Not sure if you wanting to do like this-
cat your_input.bed
chr1 100 200 region1 +
chr1 180 300 regi…
Comment: Extract gRNA sequence using cutadapt
by
GenoMax
142k
If you know what the boundaries of your construct look like then trim the left-end of the read using the tag on that end (`ktrim=l`). Then …
Comment: Extract gRNA sequence using cutadapt
by
gernophil
▴
80
> Not every read in your data is going to match a guide.
That is also true for sure. Let me clarify what I mean. For every read you should…
Answer: VG : No reference-sense paths available in the graph; falling back to generic pa
by
anovak
▴
120
If your GFA has paths in it that are P lines with names that don't include a sample name, contig name, and separators, then those are what …
Comment: Extract gRNA sequence using cutadapt
by
GenoMax
142k
> if you look at a fastq file you should be able to tell for every read definitely, if it has a perfect match for a guide in it and what gu…
Traffic: 1603 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6