3
votes
6
replies
2.1k
views
7 follow
2
votes
6
replies
2.0k
views
6
votes
6
replies
1.9k
views
2
votes
2
replies
1.8k
views
updated 22 days ago by
e.r.zakiev
▴
210
•
written 3.9 years ago by
n.anuragsharma
▴
40
0
votes
3
replies
1.8k
views
updated 4 days ago by
Ram
44k
•
written 3.0 years ago by
giulia.trauzzi
▴
10
6
votes
5
replies
1.8k
views
11 days ago by
Arton
▴
10
1
vote
2
replies
1.7k
views
4
votes
15
replies
1.7k
views
updated 22 days ago by
Gordon Smyth
★
7.2k
•
written 5 months ago by
raplayer
▴
10
0
votes
9
replies
1.5k
views
1
vote
6
replies
1.5k
views
updated 7 days ago by
scideas
▴
30
•
written 8 months ago by
rohitsatyam102
▴
870
2
votes
7
replies
1.4k
views
6 follow
updated 27 days ago by
Gordon Smyth
★
7.2k
•
written 9 months ago by
Calum
▴
10
1
vote
2
replies
1.3k
views
8
votes
16
replies
1.3k
views
4
votes
6
replies
1.2k
views
1
vote
2
replies
1.2k
views
21 days ago by
Zhenyu Zhang
★
1.2k
2
votes
4
replies
1.2k
views
2 days ago by
Aspire
▴
330
1
vote
4
replies
1.2k
views
3
votes
0
replies
1.1k
views
20 days ago by
Ibrahim Tanyalcin
★
1.2k
2
votes
10
replies
1.1k
views
13
votes
14
replies
1.1k
views
updated 18 days ago by
t.montserrat.ayuso
▴
40
•
written 26 days ago by
carolofharvest
▴
40
2
votes
11
replies
1.1k
views
updated 27 days ago by
jkbonfield
★
1.2k
•
written 5 weeks ago by
me
•
0
7
votes
16
replies
1.0k
views
27 days ago by
Ruqaiya
•
0
2
votes
5
replies
967
views
4
votes
11
replies
951
views
1
vote
10
replies
922
views
updated 20 days ago by
antonio.spl
•
0
•
written 4 months ago by
microorganism_001
▴
30
1
vote
3
replies
910
views
updated 3 days ago by
David-walson
•
0
•
written 16 months ago by
Apprentice
▴
160
2
votes
3
replies
894
views
updated 21 days ago by
vjanve
•
0
•
written 7 months ago by
mateomejias
•
0
3
votes
8
replies
876
views
updated 3 days ago by
a.penatauber
•
0
•
written 3 months ago by
Lucas R.F.
▴
20
10
votes
14
replies
860
views
6 follow
updated 18 days ago by
GenoMax
142k
•
written 24 days ago by
nicole.kavanagh
•
0
4
votes
6
replies
840
views
7 follow
updated 29 days ago by
dsull
★
6.1k
•
written 4 weeks ago by
qudrat.nii
▴
10
1
vote
5
replies
827
views
written 6 months ago by
Daniel
▴
30
1
vote
16
replies
826
views
updated 7 days ago by
GenoMax
142k
•
written 10 days ago by
hophuquy0944
•
0
7
votes
13
replies
826
views
7 follow
1
vote
3
replies
820
views
updated 9 days ago by
sansan_96
▴
90
•
written 2.8 years ago by
boymin2020
▴
80
0
votes
1
reply
813
views
2
votes
11
replies
806
views
0
votes
1
reply
795
views
0
votes
3
replies
794
views
2
votes
9
replies
794
views
updated 11 days ago by
Pierre Lindenbaum
162k
•
written 18 days ago by
schmince
•
0
1
vote
6
replies
782
views
updated 19 days ago by
GenoMax
142k
•
written 6 months ago by
michael.flower.14
▴
180
0
votes
2
replies
764
views
updated 23 days ago by
clairechung112
•
0
•
written 2.0 years ago by
amahdi779
•
0
0
votes
1
reply
758
views
3
votes
8
replies
757
views
updated 19 days ago by
Chris Dean
▴
410
•
written 23 days ago by
sovrappensiero
▴
100
1
vote
1
reply
741
views
1
vote
2
replies
734
views
updated 7 days ago by
Muhammad
•
0
•
written 2.6 years ago by
mari.johnson
•
0
2
votes
4
replies
733
views
updated 19 days ago by
Pierre Lindenbaum
162k
•
written 21 months ago by
t.ali
•
0
0
votes
1
reply
732
views
updated 25 days ago by
Ram
44k
•
written 25 days ago by
Dr Huma Naz
•
0
0
votes
3
replies
713
views
5
votes
5
replies
704
views
updated 22 days ago by
Mbofire
•
0
•
written 4 weeks ago by
Ming Tommy Tang
★
3.9k
0
votes
9
replies
701
views
Recent Votes
Recent Locations •
All
Sweden, just now
Morocco, 2 minutes ago
Israel, 4 minutes ago
New Zealand, 13 minutes ago
USA, 18 minutes ago
Machhagan, 19 minutes ago
Turkey, 22 minutes ago
Recent Awards •
All
Popular Question to
rj.rezwan
•
0
Popular Question to
wonde2000
•
0
Popular Question to
Pegasus
▴
100
Popular Question to
seta
★
1.9k
Popular Question to
melissachua90
▴
70
Recent Replies
Comment: Harmony integration group.by.var parameter
by
Picasa
▴
640
For downstream analysis, after integration, my plan is to annotate each cluster/cell type and then perform a DGE analysis of KO versus WT f…
Comment: How to calculate cell type frequency between two groups in single cell data
by
Bastien Hervé
5.3k
That is correct
Answer: Setting a threshold on gene expression for subsetting (scRNA-seq)
by
ATpoint
82k
That depends on the data and the marker. Generally I would plot violins per cluster for the marker(s) and see whether one robustly overexpr…
Comment: Error when i use EVidenceModeler to do the genome annotation
by
peanut
•
0
thank you so much ,i get it
Comment: Number of non-ATCG nucleotides replaced by Salmon
by
Tonya S.
▴
10
Oops, yes, that must be where they are coming from. For some reason, I was thinking the genome was just soft-masked. How embarrassing! Than…
Answer: Number of non-ATCG nucleotides replaced by Salmon
by
Rob
6.6k
If there are no other signs that anything is awry, I probably wouldn't worry about this. Is it possible that these non-canonical nucleotid…
Comment: Introducing NovaDemux, a Sequence Demultiplexer that Increases Yield and Salvage
by
Brian Bushnell
20k
I examined nine 10B runs and five 25B runs (we just started getting 25B flowcells a few months ago). I did not pay close attention but it …
Comment: Introducing NovaDemux, a Sequence Demultiplexer that Increases Yield and Salvage
by
GenoMax
142k
> I don't know how widespread these issues are outside of JGI.
Very few small/medium sequencing centers likely have NovaSeq X. This is the…
Comment: Introducing NovaDemux, a Sequence Demultiplexer that Increases Yield and Salvage
by
Brian Bushnell
20k
Supporting figures, taken from some slides I prepared for internal use.
HDist 0, 1, and 2 correspond to 0, 1, and 2 mismatches allowed in …
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation
by
hannes.bongartz
•
0
This works. Thank you so so much!
Comment: Harmony integration group.by.var parameter
by
jared.andrews07
★
17k
>I am not sure, but using "Sample_ID" might remove the differences between the conditions right ?
More than likely, it'd at least impact t…
Comment: Harmony integration group.by.var parameter
by
Picasa
▴
640
Thanks jared.andrews07 for your answer.
So, you are suggesting to use only "Donor" in the integration?
```r
RunHarmony(seu_obj, group.by.…
Comment: Single cell analysis: Unable to subset cells in seurat object using desired nFea
by
sc_analysis
•
0
I am not sure what should be the cut off. Looking at the vlnplot before subsetting i thought most of the cells are falling under 7500 nfeat…
Comment: How to calculate cell type frequency between two groups in single cell data
by
Sara
▴
30
Thank you for your comment and sorry if this question might be so basic.
How can I normalize the number of cells?
If I am not wrong the i…
Traffic: 1249 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6