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23 results • Page
1 of 1
Sort: replies
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Views
Votes
Replies
0
votes
6
replies
380
views
Post-imputation plot
michigan-imputation-server
quality-control
8 hours ago by
kl
▴ 10
1
vote
5
replies
171
views
Bacterial plasmid analysis
bacteria
plasmid
wgs
hybridassembly
sequencing
updated 1 hour ago by
Mensur Dlakic
★ 27k • written 14 hours ago by
nicole.kavanagh
• 0
0
votes
5
replies
298
views
Telescope issue
Telescope
RNA-seq
updated 14 hours ago by
GenoMax
141k • written 1 day ago by
eleven11
• 0
1
vote
3
replies
224
views
DESeq2 processing problems
deseq2
R
updated 12 hours ago by
ATpoint
82k • written 23 hours ago by
jagdish7921
• 0
1
vote
2
replies
247
views
Minimum RAM and Storage requirement for creating PSSM using ncbi-blast-2.2.30+-x64-linux
blast
pssm
18 hours ago by
Nafi
• 0
2
votes
2
replies
217
views
p-value in CIBERSORT
CIBERSORT
p-value
21 hours ago by
michelafrancesconi9
▴ 20
1
vote
2
replies
166
views
POSSUM not working due to incompatible pssm file
fasta
pse-pssm
pssm
POSSUM
1 hour ago by
rianna.collins
• 0
0
votes
1
reply
106
views
GATK won't produce figures while analyzing covariates to generate 'recal_plots.pdf'
GATK
recalibration
updated 6 hours ago by
GenoMax
141k • written 9 hours ago by
mgranada3
▴ 30
0
votes
1
reply
508
views
Basic stats in hierfstat
Fst
stats
hierfstat
updated 4 hours ago by
mdav
• 0 • written 18 months ago by
Zoe
• 0
0
votes
1
reply
150
views
RNA editing sites based on DNA seq and RNA seq
RNA-editing
updated 12 hours ago by
Adam
▴ 30 • written 1 day ago by
Ahiad Chen Zion
• 0
0
votes
1
reply
724
views
cnetplot category names are too long
RNASeq
clusterprofiler
cnetplot
enrichplot
updated 14 hours ago by
bkleiboeker
▴ 370 • written 2.7 years ago by
carov
• 0
0
votes
1
reply
153
views
How to find overlap of clusters in two seurat porject
clustering
seurat
updated 13 hours ago by
Adam
▴ 30 • written 1 day ago by
J
• 0
0
votes
1
reply
38
views
Odd alignment question/finding
Alignment
updated 54 minutes ago by
liorglic
★ 1.4k • written 4 hours ago by
poordumbsillyidiot
• 0
0
votes
1
reply
86
views
Mutect2 for mitochondria variant discovery
mutect2
mitochondria
updated 13 hours ago by
Ram
43k • written 15 hours ago by
ernestine.kubi
• 0
0
votes
1
reply
191
views
Is there a way to increase the automatic label text size in Cytoscape?
Cytoscape
updated 2 hours ago by
Scooter
▴ 280 • written 6 days ago by
avocado123
• 0
0
votes
1
reply
129
views
Alternatives to metanalyisis. P integration. Horiztonal integration RNA-seq
rna-seq
updated 20 hours ago by
i.sudbery
19k • written 1 day ago by
Edmond
• 0
0
votes
0
replies
4
views
How to perform single cell multimodal integration using Seurat for Geo datasets
cell
analysis
multimodal
single
10 minutes ago by
nithya
• 0
0
votes
0
replies
56
views
Tools to circularise the ion torrent bacterial genome assembly
iontorrent
bacteria
circularise
15 hours ago by
VITALA
• 0
0
votes
0
replies
41
views
Tassel 5 GBS: GBSSeqToTagDBPlugin producing empty database
GBS
Tassel5
10 hours ago by
meck
• 0
0
votes
0
replies
63
views
Looking for the best way to interpret these data
RNA-seq
ontology
GO
updated 8 hours ago by
Ram
43k • written 10 hours ago by
Oscar
▴ 10
0
votes
0
replies
19
views
Combining Methylation Microarray data from different platforms
Microarray
DNA
EPIC
450K
Methylation
3 hours ago by
James
▴ 10
0
votes
0
replies
11
views
Successfully identified and Masked rpeats using RM. What Next?
sequence
annotation
repeatmasker
illumina
assembly
1 hour ago by
Vijith
▴ 30
0
votes
0
replies
10
views
Download eQTL data of one specific gene for all tissues from GTEx
eQTL
GTEx
1 hour ago by
Jeol
▴ 20
23 results • Page
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Recent Votes
Comment: POSSUM not working due to incompatible pssm file
Comment: Can't install AnnotationHub
C: TOPGO- how to do GO enrichment using a custom go database?
Answer: NGS forensics: how to know if data is fabricated
Comment: Adjust pvalue in R with different approach give me all different outcome
Comment: Bacterial plasmid analysis
Comment: DESeq2 processing problems
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Comment: Odd alignment question/finding
by
liorglic
★ 1.4k
I can't come up with an explanation, but two things you can try for debugging are: 1) look at the fastp stats - do they add up and make sen…
Answer: Bacterial plasmid analysis
by
Mensur Dlakic
★ 27k
If you put all your sequences in separate files but in the same directory, this program will build a cladogram based on average nucleotide …
Comment: POSSUM not working due to incompatible pssm file
by
rianna.collins
• 0
Thank you so much. I'm new to this and didn't realise there was a code option.
Answer: Is there a way to increase the automatic label text size in Cytoscape?
by
Scooter
▴ 280
Greetings, Are you saying that you can't use the size setting in the style tab? That should certainly work, as should the label size se…
Answer: Basic stats in hierfstat
by
mdav
• 0
Hi Zoe, did you find an answer for this? I am also getting the same error.
Comment: GATK won't produce figures while analyzing covariates to generate 'recal_plots.p
by
GenoMax
141k
Your cluster may be missing libraries etc to create the PDF plots (this looks like a cluster job submission) on your cluster. Did you check…
Comment: Post-imputation plot
by
kl
▴ 10
Ok yes I think my thought was that given these errors, I could remove the mismatches and flip the alleles which seem to need flipping based…
Comment: Bacterial plasmid analysis
by
nicole.kavanagh
• 0
I think I will perhaps use their predominant PlasmidFinder type to group plasmids together and create separate core phylogenies for each as…
Comment: Bacterial plasmid analysis
by
GenoMax
141k
Can you classify the plasmids based on function (resistance genes they are carrying or some other criteria). Sizes above are indicating a w…
Comment: DESeq2 processing problems
by
ATpoint
82k
Initially posted here https://support.bioconductor.org/p/9158036/ where I suggested to put code and data and noted that GEOquery returns ar…
Answer: Post-imputation plot
by
LChart
3.9k
I agree that some need to be flipped (A/T and C/G where your panel frequency is 1 - ref panel frequency). There are other variants which yo…
Comment: RNA editing sites based on DNA seq and RNA seq
by
Adam
▴ 30
Are those 20% unaligned reads coming after hyper-editing detection?
Answer: How to find overlap of clusters in two seurat porject
by
Adam
▴ 30
I think your best bet would be to use annotation mapping. You can use the features of your clusters in group 1 and apply them to group 2 to…
Answer: DESeq2 processing problems
by
Adam
▴ 30
> when I put in the dataset, I am not able to run it for DEG analysis because system asks me to remove the first column which is of gene na…
Comment: Bacterial plasmid analysis
by
nicole.kavanagh
• 0
Thank you so much for your quick response, I have been searching scientific papers for about a week but have failed to come up with a reaso…
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