updated 4 days ago by
Ram
44k
•
written 5 days ago by
manuelmourato25
•
0
1
vote
5
replies
335
views
3
votes
4
replies
427
views
2
votes
11
replies
759
views
1
vote
1
reply
206
views
updated 4 days ago by
Nyksubuz
▴
20
•
written 5 days ago by
mirwa.zidi93
•
0
0
votes
0
replies
150
views
0
votes
0
replies
146
views
5 days ago by
ebertomeup
•
0
0
votes
3
replies
289
views
updated 4 days ago by
Pierre Lindenbaum
161k
•
written 5 days ago by
saifulislam99121
•
0
1
vote
3
replies
297
views
0
votes
1
reply
596
views
updated 5 days ago by
valdirbarth
▴
20
•
written 13 months ago by
Salomé
•
0
0
votes
0
replies
150
views
1
vote
1
reply
203
views
0
votes
2
replies
220
views
2
votes
3
replies
263
views
0
votes
5
replies
345
views
20 hours ago by
mavy
▴
10
1
vote
1
reply
254
views
5 days ago by
ramiro.barrantes
•
0
2
votes
6
replies
1.9k
views
0
votes
1
reply
182
views
0
votes
1
reply
162
views
1
vote
5
replies
814
views
written 6 months ago by
Daniel
▴
30
0
votes
0
replies
115
views
updated 6 days ago by
GenoMax
142k
•
written 6 days ago by
Rodolfo Adrián
•
0
1
vote
3
replies
213
views
updated 6 days ago by
Zhenyu Zhang
★
1.2k
•
written 6 days ago by
shpak.max
▴
50
2
votes
4
replies
287
views
updated 6 days ago by
yura.grabovska
▴
90
•
written 6 days ago by
ev97
▴
20
1
vote
16
replies
776
views
updated 3 days ago by
GenoMax
142k
•
written 6 days ago by
hophuquy0944
•
0
0
votes
4
replies
254
views
5 days ago by
LucisTheFather
•
0
0
votes
1
reply
144
views
6 days ago by
asalimih
▴
60
0
votes
0
replies
115
views
2
votes
2
replies
195
views
updated 5 days ago by
Ram
44k
•
written 6 days ago by
jsmith120f
•
0
2
votes
2
replies
211
views
1
vote
5
replies
239
views
updated 6 days ago by
Pierre Lindenbaum
161k
•
written 6 days ago by
biology_inform
▴
50
1
vote
4
replies
308
views
0
votes
1
reply
165
views
updated 5 days ago by
Papyrus
★
2.9k
•
written 6 days ago by
yura.grabovska
▴
90
0
votes
1
reply
160
views
0
votes
5
replies
318
views
1
vote
5
replies
281
views
5 days ago by
kl
▴
10
0
votes
9
replies
385
views
5 days ago by
njornet
▴
20
0
votes
3
replies
182
views
3
votes
3
replies
246
views
4
votes
1
reply
336
views
1
vote
4
replies
302
views
0
votes
0
replies
100
views
6 days ago by
Shaimaa Gamal
▴
10
0
votes
0
replies
89
views
0
votes
5
replies
299
views
0
votes
1
reply
182
views
0
votes
0
replies
105
views
0
votes
0
replies
101
views
6 days ago by
brunofelicianodeomena
•
0
1
vote
2
replies
220
views
updated 6 days ago by
colindaven
6.4k
•
written 6 days ago by
mbrav005
•
0
0
votes
1
reply
153
views
1
vote
2
replies
243
views
2
votes
2
replies
212
views
updated 6 days ago by
GenoMax
142k
•
written 6 days ago by
dlera.lozano
▴
10
2
votes
3
replies
226
views
Recent Votes
Recent Locations •
All
USA, just now
United States, just now
United States, just now
Stony Brook University, NY, just now
United States, 2 minutes ago
Brazil, 2 minutes ago
Bologna, 4 minutes ago
Recent Awards •
All
Popular Question to
natasha.sernova
★
4.0k
Popular Question to
Picasa
▴
640
Popular Question to
Rafael Soler
★
1.2k
Popular Question to
applepie
•
0
Popular Question to
Peter Chung
▴
200
Recent Replies
Answer: Is it possible to run CibersortX with a very small number of samples?
by
finch
•
0
Hi! I had a very similar issue and it's likely not at all related to your number of samples but to the format of your mixture file! Ciberso…
Comment: How can we convert a vcf to fasta, so that I can blast some genes against that w
by
Ram
44k
You cannot *convert* a VCF to a FASTA as they have vastly different information content. Please explain your process - what exactly do you …
Comment: Comparing Analysis Strategies for scRNA-seq Data: Separate vs. Merged Analysis o
by
Shukai
•
0
Thank you Ram for the comments! Noted for future posts.
Comment: Where to find old version of GATK best practice
by
Zhenyu Zhang
★
1.2k
I am looking for diagrams, and step-by-step instructions of how to build my pipelines.
I think the github is only helpful if you are a wdl…
Comment: Where to find old version of GATK best practice
by
Zhenyu Zhang
★
1.2k
oh, this is helpful. Thanks.
Comment: Comparing Analysis Strategies for scRNA-seq Data: Separate vs. Merged Analysis o
by
Ram
44k
1. You can edit your post and add relevant details. There is no need to add separate comments with relevant details especially when it's no…
Answer: Functional enrichment analysis for unique gene IDs
by
geneontologyhelp
▴
400
If you are looking at producing GO annotations, we currently only recommend InterProScan, and basically only for novel organisms or where t…
Answer: Question about samtools view flags (paired reads vs. properly paired reads)
by
Pierre Lindenbaum
161k
paired reads = the experiment was a paired end assay: each fragment was sequenced on 5' and 3', two FASTQ files are generated by the seque…
Answer: z-score of gene set
by
Matthias Zepper
4.6k
The z-score is a measure of how many standard deviations a particular data point is from the mean of a distribution. A positive z-score ind…
Answer: converting transcript IDs (Ensembl) to gene symbols in R
by
bk11
★
2.5k
You can do as following:
library(biomaRt)
# Set up the Ensembl BioMart connection
ensembl <- useEnsembl(biomart = "genes",…
Comment: How can we convert a vcf to fasta, so that I can blast some genes against that w
by
Pierre Lindenbaum
161k
well you try to use FastaAlternateReferenceMaker https://gatk.broadinstitute.org/hc/en-us/articles/360037594571-FastaAlternateReferenceMak…
Comment: z-score of gene set
by
bk11
★
2.5k
Can you please tell us what will be your propose of z-score calculation?
Comment: DRAGEN gVCF files and joint calling GATK-GenomicsDB
by
DBScan
▴
300
I think I did it once, but why would you use GATK with DRAGEN gVCF files? If you have a DRAGEN, the iterative gVCF Genotyper does a much fa…
Answer: Practical Haplotype Graph v2 not finding correct paths
by
beantkapoor16
▴
10
So, I just tested it and it's performing much better now. Most of the haplotype paths are coming from the expected haplotypes (australasica…
Traffic: 2864 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6