0
votes
6
replies
2.1k
views
4
votes
5
replies
467
views
3
votes
5
replies
423
views
2
votes
5
replies
439
views
3
votes
5
replies
383
views
updated 1 hour ago by
jared.andrews07
★
17k
•
written 19 days ago by
Oburah
•
0
1
vote
5
replies
384
views
4
votes
5
replies
3.4k
views
updated 13 days ago by
DavidStreid
▴
90
•
written 6.4 years ago by
madhu.9124
▴
60
0
votes
5
replies
353
views
8 days ago by
SilhouetteQ
•
0
8
votes
5
replies
6.7k
views
0
votes
5
replies
456
views
updated 26 days ago by
GenoMax
142k
•
written 27 days ago by
Bertalan_Takacs
▴
90
2
votes
5
replies
448
views
1
vote
5
replies
663
views
updated 28 days ago by
atowns21
•
0
•
written 4 months ago by
benjamin.pyenson
•
0
3
votes
5
replies
365
views
updated 29 days ago by
GenoMax
142k
•
written 29 days ago by
ahmad.sajad4541
•
0
6
votes
5
replies
2.3k
views
6
votes
5
replies
1.7k
views
6 days ago by
Arton
▴
10
2
votes
5
replies
556
views
23 days ago by
ashaneev07
▴
20
5
votes
5
replies
354
views
1
vote
5
replies
512
views
3
votes
5
replies
653
views
1
vote
5
replies
814
views
written 6 months ago by
Daniel
▴
30
3
votes
5
replies
415
views
6 hours ago by
beantkapoor16
▴
10
1
vote
5
replies
414
views
18 days ago by
Riccardo
▴
10
0
votes
5
replies
317
views
5
votes
5
replies
369
views
updated 19 days ago by
atharvakarkare14
▴
40
•
written 19 days ago by
Begonia_pavonina
▴
150
0
votes
5
replies
223
views
1
vote
5
replies
488
views
4
votes
5
replies
4.4k
views
updated 4 days ago by
dario.garvan
▴
520
•
written 7.2 years ago by
d-cameron
★
2.9k
0
votes
5
replies
461
views
6 follow
updated 18 days ago by
b.contreras.moreira
▴
200
•
written 19 days ago by
JH
•
0
0
votes
5
replies
364
views
0
votes
5
replies
441
views
0
votes
5
replies
319
views
1
vote
5
replies
415
views
updated 13 days ago by
Michael
54k
•
written 14 days ago by
qwertyuiop26
•
0
0
votes
5
replies
412
views
updated 17 days ago by
chrchang523
10k
•
written 18 days ago by
curious
▴
750
2
votes
5
replies
963
views
2
votes
5
replies
292
views
updated 7 days ago by
Philipp Bayer
8.5k
•
written 7 days ago by
林明德
•
0
1
vote
5
replies
284
views
5 days ago by
kl
▴
10
3
votes
5
replies
359
views
2
votes
5
replies
2.5k
views
updated 13 days ago by
Cameron.walker9900
•
0
•
written 5.1 years ago by
Assa Yeroslaviz
★
1.8k
2
votes
5
replies
524
views
1
vote
5
replies
530
views
28 days ago by
anasjamshed
▴
120
2
votes
5
replies
561
views
1
vote
5
replies
337
views
updated 4 days ago by
Ram
44k
•
written 5 days ago by
manuelmourato25
•
0
1
vote
5
replies
387
views
0
votes
5
replies
300
views
0
votes
5
replies
364
views
8 days ago by
feather-W
•
0
0
votes
5
replies
474
views
updated 24 days ago by
Istvan Albert
100k
•
written 27 days ago by
sehriban.buyukkilic
▴
10
1
vote
5
replies
241
views
updated 6 days ago by
Pierre Lindenbaum
161k
•
written 6 days ago by
biology_inform
▴
50
0
votes
5
replies
345
views
22 hours ago by
mavy
▴
10
2
votes
5
replies
609
views
0
votes
5
replies
448
views
Recent Votes
Recent Locations •
All
Turkey, 1 minute ago
United States, 2 minutes ago
United States, 2 minutes ago
india, 5 minutes ago
United States, 6 minutes ago
Italy, 8 minutes ago
Cambridge, MA, 10 minutes ago
Recent Awards •
All
Scholar to
Ashutosh Pandey
12k
Popular Question to
O.rka
▴
720
Popular Question to
natasha.sernova
★
4.0k
Popular Question to
Picasa
▴
640
Popular Question to
Rafael Soler
★
1.2k
Recent Replies
Comment: Where are the illumina adapters on Trimmomatic take from?
by
bioinfo
▴
150
Thank you for the explanation. Is it more appropriate then to use the sequence from the illumina documentation or the one from the github?
Comment: Question about samtools view flags (paired reads vs. properly paired reads)
by
mrk
•
0
Thanks. What determines what constitutes a good distance? I have some targeted panel data and looking at flagstat, almost all reads are pai…
Comment: Where are the illumina adapters on Trimmomatic take from?
by
GenoMax
142k
Illumina indexed adapters share a core sequence at the beginning which is what is indicated in your link. Trimming programs will remove seq…
Comment: Allele count of 2 for homoplasmic MT variants in VCF
by
Ram
44k
Please stop using `bioinformatics` as a tag unless your post is about the field of bioinformatics itself.
Comment: Multiplexing for pooled CRISPR screen sequencing
by
GenoMax
142k
> If we switch to pair-end sequencing with dual-index barcode
You can use dual-indexing with single end reads. You don't need to do paired…
Comment: Super ehancers
by
jared.andrews07
★
17k
That is not valid GFF format, so that is probably going to be problematic. See the [GFF spec](https://github.com/The-Sequence-Ontology/Spec…
Comment: Error in CIBERSORTx ($ operator is invalid for atomic vectors)
by
finch
•
0
Hey! I had this issue and I think I can help- could you take a screenshot of the .txt file opened in the notepad?
Answer: Is it possible to run CibersortX with a very small number of samples?
by
finch
•
0
Hi! I had a very similar issue and it's likely not at all related to your number of samples but to the format of your mixture file! Ciberso…
Comment: How can we convert a vcf to fasta, so that I can blast some genes against that w
by
Ram
44k
You cannot *convert* a VCF to a FASTA as they have vastly different information content. Please explain your process - what exactly do you …
Comment: Comparing Analysis Strategies for scRNA-seq Data: Separate vs. Merged Analysis o
by
Shukai
•
0
Thank you Ram for the comments! Noted for future posts.
Comment: Where to find old version of GATK best practice
by
Zhenyu Zhang
★
1.2k
I am looking for diagrams, and step-by-step instructions of how to build my pipelines.
I think the github is only helpful if you are a wdl…
Comment: Where to find old version of GATK best practice
by
Zhenyu Zhang
★
1.2k
oh, this is helpful. Thanks.
Comment: Comparing Analysis Strategies for scRNA-seq Data: Separate vs. Merged Analysis o
by
Ram
44k
1. You can edit your post and add relevant details. There is no need to add separate comments with relevant details especially when it's no…
Answer: Functional enrichment analysis for unique gene IDs
by
geneontologyhelp
▴
410
If you are looking at producing GO annotations, we currently only recommend InterProScan, and basically only for novel organisms or where t…
Answer: Question about samtools view flags (paired reads vs. properly paired reads)
by
Pierre Lindenbaum
161k
paired reads = the experiment was a paired end assay: each fragment was sequenced on 5' and 3', two FASTQ files are generated by the seque…
Traffic: 2978 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6