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116,765 results • Page
2 of 2336
Sort: Rank
Rank
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Votes
Replies
0
votes
1
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177
views
VG : No reference-sense paths available in the graph; falling back to generic paths.
vg
updated 2 days ago by
anovak
▴ 120 • written 2 days ago by
Hang
• 0
1
vote
3
replies
227
views
DiffBind: no peaks in DBA
MACS2
DiffBind
ChIP-seq
updated 2 days ago by
jared.andrews07
★ 16k • written 2 days ago by
yvonneh
▴ 10
3
votes
5
replies
296
views
Converting CRAM to FastQ
GATK
samtools
cram
SamToFastq
fastq
1 day ago by
Maverick
▴ 10
3
votes
8
replies
6.6k
views
7 follow
GATK genomicsDBimport intervals for WGS
gatk
genomicsdbimport
updated 2 days ago by
Sd
• 0 • written 5.1 years ago by
Nicolas Rosewick
11k
0
votes
2
replies
185
views
Base Quality Score Recalibration with different reference genome
SNPs
GATK
BQSR
RNA-seq
2 days ago by
dtnondorf
• 0
0
votes
1
reply
206
views
Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA2 - where to go from here?
nf-core
16S
amplicon
dada2
ampliseq
updated 2 days ago by
Chris Dean
▴ 390 • written 2 days ago by
sovrappensiero
▴ 90
1
vote
2
replies
231
views
RNA-seq data for deep learning classification
rna-seq
2 days ago by
yahn
• 0
2
votes
7
replies
391
views
How to access TCGA samples that were treated with a specific drug?
TCGA
RNA-seq
updated 8 hours ago by
Zhenyu Zhang
★ 1.2k • written 2 days ago by
Qroid
▴ 40
0
votes
1
reply
508
views
Loss of 'var' using concatenation of AnnData objects
Scanpy
AnnData
updated 2 days ago by
Hugo
• 0 • written 4 months ago by
Rachel
• 0
0
votes
1
reply
144
views
Provean help
variant
Provean
updated 2 days ago by
Mensur Dlakic
★ 27k • written 3 days ago by
Arun Sai Kumar
• 0
1
vote
1
reply
160
views
Download eQTL data of one specific gene for all tissues from GTEx
eQTL
GTEx
updated 3 days ago by
bk11
★ 2.4k • written 3 days ago by
Jeol
▴ 20
1
vote
1
reply
165
views
Super ehancers
enhancers
updated 3 days ago by
jared.andrews07
★ 16k • written 3 days ago by
Oburah
• 0
0
votes
6
replies
280
views
How does gene length effect the number of reads mapped
RNA-seq
CPM
sequencing
updated 2 days ago by
dsull
★ 6.0k • written 3 days ago by
Chen
• 0
5
votes
5
replies
261
views
Problem with data downloaded from Short Reads Archive (SRA)
SRA
DADA2
metabarcoding
updated 3 days ago by
atharvakarkare14
▴ 30 • written 3 days ago by
Begonia_pavonina
▴ 150
1
vote
7
replies
432
views
Downsampling long-read BAM files
nanopore
BAM
QC
ONT
downsampling
2 days ago by
eebloom
▴ 80
3
votes
3
replies
304
views
What analysis suitable to identify similarly expressed genes between two samples (treated vs untreated). Contrary to DGE analysis,
Gene-Expression
RNA
NOISeq
DGE
updated 2 days ago by
ATpoint
82k • written 3 days ago by
alifafiq1
• 0
0
votes
0
replies
96
views
Use of annotation of integrated Seurat object in single sample
Seurat
3 days ago by
Bine
▴ 60
0
votes
0
replies
101
views
News:
Beyond beginner R: Advancing your coding skills - September 16-19
Advanced-Coding
Programming
R
updated 3 days ago by
Ram
43k • written 3 days ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
219
views
Subsetting and merging back Seurat Object brings different results
Seurat
3 days ago by
Bine
▴ 60
0
votes
0
replies
130
views
Job:
Postdoctoral Position in Bioinformatics - Mainz, Germany
NGS
Genomics
Post-doc
R-loops
updated 3 days ago by
Ram
43k • written 3 days ago by
4r-rtg
• 0
1
vote
1
reply
136
views
Discrepancy in read counts from fastq
downsampling
fastq
updated 3 days ago by
Ram
43k • written 3 days ago by
marco.barr
▴ 90
0
votes
0
replies
84
views
edgeR contrasts for analysis of reciprocal hybrid crosses - averaging, pooling, and comparing groups
edgeR
3 days ago by
Rhiannon
• 0
0
votes
0
replies
96
views
Successfully identified and Masked rpeats using RM. What Next?
sequence
annotation
repeatmasker
illumina
assembly
3 days ago by
Vijith
▴ 30
9
votes
10
replies
486
views
6 follow
Bacterial plasmid analysis
bacteria
plasmid
wgs
hybridassembly
sequencing
updated 2 days ago by
Zamin Iqbal
▴ 20 • written 3 days ago by
nicole.kavanagh
• 0
0
votes
1
reply
274
views
Is there a way to increase the automatic label text size in Cytoscape?
Cytoscape
updated 3 days ago by
Scooter
▴ 280 • written 9 days ago by
avocado123
• 0
0
votes
0
replies
96
views
Combining Methylation Microarray data from different platforms
Microarray
DNA
EPIC
450K
Methylation
3 days ago by
James
▴ 10
0
votes
1
reply
585
views
Basic stats in hierfstat
Fst
stats
hierfstat
updated 3 days ago by
mdav
• 0 • written 18 months ago by
Zoe
• 0
1
vote
3
replies
226
views
Odd alignment question/finding
Alignment
updated 2 days ago by
barslmn
★ 2.1k • written 3 days ago by
poordumbsillyidiot
• 0
0
votes
1
reply
203
views
GATK won't produce figures while analyzing covariates to generate 'recal_plots.pdf'
GATK
recalibration
updated 3 days ago by
GenoMax
142k • written 3 days ago by
mgranada3
▴ 30
0
votes
0
replies
96
views
Tassel 5 GBS: GBSSeqToTagDBPlugin producing empty database
GBS
Tassel5
3 days ago by
meck
• 0
0
votes
0
replies
124
views
Looking for the best way to interpret these data
RNA-seq
ontology
GO
updated 3 days ago by
Ram
43k • written 3 days ago by
Oscar
▴ 10
0
votes
7
replies
533
views
Post-imputation plot
michigan-imputation-server
quality-control
updated 2 days ago by
LChart
3.9k • written 5 days ago by
kl
▴ 10
0
votes
1
reply
217
views
How to find overlap of clusters in two seurat porject
clustering
seurat
updated 3 days ago by
Adam
▴ 30 • written 4 days ago by
J
• 0
1
vote
3
replies
302
views
DESeq2 processing problems
deseq2
R
updated 3 days ago by
ATpoint
82k • written 4 days ago by
jagdish7921
• 0
0
votes
1
reply
777
views
cnetplot category names are too long
clusterprofiler
RNA-Seq
enrichplot
cnetplot
updated 3 days ago by
Ram
43k • written 2.7 years ago by
carov
• 0
0
votes
1
reply
145
views
Mutect2 for mitochondria variant discovery
mutect2
mitochondria
updated 3 days ago by
Ram
43k • written 4 days ago by
ernestine.kubi
• 0
0
votes
0
replies
105
views
Tools to circularise the ion torrent bacterial genome assembly
iontorrent
bacteria
circularise
4 days ago by
VITALA
• 0
1
vote
2
replies
245
views
POSSUM not working due to incompatible pssm file
fasta
pse-pssm
pssm
POSSUM
3 days ago by
rianna.collins
• 0
0
votes
1
reply
181
views
Alternatives to metanalyisis. P integration. Horiztonal integration RNA-seq
rna-seq
updated 4 days ago by
i.sudbery
19k • written 4 days ago by
Edmond
• 0
0
votes
0
replies
142
views
What open-source tools can determine the coverage/completion of a pathway based on EC numbers?
metagenomics
metacyc
enzyme
pathway
genomics
4 days ago by
O.rka
▴ 710
0
votes
1
reply
646
views
after selecting specific GO terms to plot, cneplot is not showing any color for genes, GO terms and only showing lines without nodes.
cneplot
updated 4 days ago by
Ram
43k • written 4 days ago by
Dr Huma Naz
• 0
2
votes
2
replies
270
views
p-value in CIBERSORT
CIBERSORT
p-value
4 days ago by
michelafrancesconi9
▴ 20
0
votes
5
replies
368
views
Telescope issue
Telescope
RNA-seq
updated 3 days ago by
GenoMax
142k • written 4 days ago by
eleven11
• 0
5
votes
6
replies
520
views
Programmatically retrieving positions of protein active site residues
Uniprot
PDB
Proteins
updated 4 days ago by
me
▴ 760 • written 6 days ago by
Mariana
▴ 40
1
vote
1
reply
232
views
Adjust pvalue in R with different approach give me all different outcome
statistics
R
p-value
updated 4 days ago by
Ram
43k • written 4 days ago by
Jonathan Yoou
▴ 60
1
vote
2
replies
286
views
Minimum RAM and Storage requirement for creating PSSM using ncbi-blast-2.2.30+-x64-linux
blast
pssm
4 days ago by
Nafi
• 0
1
vote
3
replies
279
views
What does 'bundle_uuid' refer to in this metadata sheet?
SRA
illumina
GEO
metadata
updated 4 days ago by
GenoMax
142k • written 5 days ago by
jeffrey.maurer.informatics
• 0
0
votes
2
replies
229
views
ERROR When Using Ensembl Plants Biomart Wget API
biomart
plant
ensembl
updated 5 days ago by
GenoMax
142k • written 5 days ago by
Dora
▴ 10
0
votes
0
replies
164
views
News:
Goodbye, Slow Code? How BioNumpy can Redefine Python’s Role in Bioinformatics!
BioNumPy
Python
NumPy
updated 5 days ago by
Ram
43k • written 5 days ago by
Chakri
• 0
0
votes
1
reply
180
views
RNA editing sites based on DNA seq and RNA seq
RNA-editing
updated 3 days ago by
Adam
▴ 30 • written 5 days ago by
Ahiad Chen Zion
• 0
116,765 results • Page
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Comment: Overlap File for RACON Genome Polisher
Overlap File for RACON Genome Polisher
Answer: LD-prune variants while maintaining a list of SNPs
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Comment: Downloading full alignments from Pfam
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Answer: install package
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▴ 30
Hi, This is what happens when I run some code to diagnose the issue. First, I wanted to see what version of R was required for the package…
Comment: TaxID mapping file
by
Lada
▴ 30
thank you, I'll look at these files/documents. .
Answer: LD-prune variants while maintaining a list of SNPs
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I tried contacting Pfam, they replied that indeed there is an issue on their side with the full alignments, which should be repaired in the…
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Thank you for your response. These samples were collected from the same patient at different time points(day 0, 8 and 18) and these are ind…
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