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Answer: Answer: Subsetting Seurat object based on list of cell barcodes
9 weeks ago by Ming Tommy Tang ★ 3.9k
2
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2
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867
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Answer: Answer: How to get enhancer regions
4 months ago by Ming Tommy Tang ★ 3.9k
3
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2
replies
920
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Answer: Answer: How to rename multiple fasq files
5 months ago by Ming Tommy Tang ★ 3.9k
2
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0
replies
551
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Answer: Answer: Ensembl transcript IDs
6 months ago by Ming Tommy Tang ★ 3.9k
0
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1
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808
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Answer: Answer: Integration Seurat different healthy samples (fresh vs frozen)
6 months ago by Ming Tommy Tang ★ 3.9k
2
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1
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493
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Answer: Answer: Designing Bioinformatic Pipeline to work on the Single cell RNA sequencing data
6 months ago by Ming Tommy Tang ★ 3.9k
2
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1
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559
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Answer: Answer: Downstream analysis during sc-ATAC seq
6 months ago by Ming Tommy Tang ★ 3.9k
3
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0
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1.8k
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Answer: Answer: Picking optimal resolution for single cell in seurat pipeline
7 months ago by Ming Tommy Tang ★ 3.9k
3
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0
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695
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Answer: Answer: Bulk and Single cell TCRSeq analysis
9 months ago by Ming Tommy Tang ★ 3.9k
0
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1
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675
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Answer: Answer: Blocky p300 ChIP-seq reads
9 months ago by Ming Tommy Tang ★ 3.9k
1
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0
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715
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Answer: Answer: Phasing Classical HLA Alleles
9 months ago by Ming Tommy Tang ★ 3.9k
0
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1
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887
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Answer: Answer: scRNA-seq subclustering
10 months ago by Ming Tommy Tang ★ 3.9k
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1
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1.0k
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Answer: Answer: clustering changes in complex heatmap everytime
10 months ago by Ming Tommy Tang ★ 3.9k
0
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0
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471
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Answer: Answer: ANNOVAR Annotation of multiple VCF files error because of the absence of hg38_gn
10 months ago by Ming Tommy Tang ★ 3.9k
5
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1
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5.8k
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Answer: Answer: Convert Human to Mouse Symbols
10 months ago by Ming Tommy Tang ★ 3.9k
1
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1
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1.8k
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Answer: Answer: How to add VDJ clonotyping data to Seurat object of scRNA-seq
11 months ago by Ming Tommy Tang ★ 3.9k
1
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0
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420
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Answer: Answer: How to remove batch effect from TCGA RNA-seq data?
11 months ago by Ming Tommy Tang ★ 3.9k
0
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1
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1.0k
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Answer: Answer: Annotation of spatial data
11 months ago by Ming Tommy Tang ★ 3.9k
0
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1
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848
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Answer: Answer: How to interpret chipseq profile plot
11 months ago by Ming Tommy Tang ★ 3.9k
0
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0
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1.6k
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Answer: Answer: Adding median value to VlnPlot in Seurat
14 months ago by Ming Tommy Tang ★ 3.9k
0
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0
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2.0k
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Answer: Answer: how to know what adapter sequences to trim for RNA-seq?
14 months ago by Ming Tommy Tang ★ 3.9k
0
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0
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1.5k
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Answer: Answer: Variant Calling with Multiple Individuals in Freebayes
14 months ago by Ming Tommy Tang ★ 3.9k
0
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2
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1.8k
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Answer: Answer: Log2 FC Threshold
14 months ago by Ming Tommy Tang ★ 3.9k
1
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0
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602
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Answer: Answer: Methylation data analysis
14 months ago by Ming Tommy Tang ★ 3.9k
0
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0
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600
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Answer: Answer: Distinguishing specific reads from non-specific ones in KIR gene sequencing data
14 months ago by Ming Tommy Tang ★ 3.9k
3
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0
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2.3k
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Answer: Answer: How to perform synteny alignments and plots only with a gene?
14 months ago by Ming Tommy Tang ★ 3.9k
1
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0
replies
1.5k
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Answer: Answer: Best tools for scTCR-seq (VDJ) analysis?
16 months ago by Ming Tommy Tang ★ 3.9k
1
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0
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37k
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Answer: Answer: How to know that your RNA-seq is stranded or not?
16 months ago by Ming Tommy Tang ★ 3.9k
0
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1
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1.0k
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Answer: Answer: Counting and summation number of bases in a FASTQ.GZ file
16 months ago by Ming Tommy Tang ★ 3.9k
2
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0
replies
1.6k
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Answer: Answer: 10x scRNAseq from just R1 and R2
16 months ago by Ming Tommy Tang ★ 3.9k
1
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2
replies
815
views
Answer: Answer: Verify logistic regression assumptions
updated 15 months ago by 44k • written 16 months ago by ★ 3.9k
2
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1
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1.8k
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Answer: Answer: Unable to decide R1 and R2 from SRA data for Cell Ranger 10X count
16 months ago by Ming Tommy Tang ★ 3.9k
0
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1
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1.0k
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Answer: Answer: Mapping files to patients in TCGA (RNA-seq)
16 months ago by Ming Tommy Tang ★ 3.9k
2
votes
0
replies
835
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Answer: Answer: How can I cluster the gene expression in the tissue between different species?
17 months ago by Ming Tommy Tang ★ 3.9k
1
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1
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2.5k
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Answer: Answer: nextflow script of RNA data analysis
17 months ago by Ming Tommy Tang ★ 3.9k
1
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0
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1.5k
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Answer: Answer: make volcano plot from multiple dataframes with same genes and different foldcha
17 months ago by Ming Tommy Tang ★ 3.9k
1
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0
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1.2k
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Answer: Answer: GSEA rnk-file.
17 months ago by Ming Tommy Tang ★ 3.9k
0
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0
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5.3k
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Answer: Answer: How to avoid over-correction by using harmony or CCA to batch correction in scRN
2.7 years ago by Ming Tommy Tang ★ 3.9k
0
votes
0
replies
2.7k
views
Answer: A: Chip-exo peak-pair distribution heatmap
updated 4.4 years ago by 44k • written 10.0 years ago by ★ 3.9k
1
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0
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1.7k
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Answer: A: chipseq over various genomic locations
updated 4.4 years ago by 44k • written 10.0 years ago by ★ 3.9k
2
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0
replies
3.0k
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Answer: A: binding close to gene
updated 4.4 years ago by 44k • written 10.1 years ago by ★ 3.9k
2
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0
replies
2.6k
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Answer: A: TSS plot with htseq 0.6.1 gives segmentation fault
updated 4.4 years ago by 44k • written 10.1 years ago by ★ 3.9k
0
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0
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9.5k
views
Answer: A: How Do I Search A Genome For A Known Motif, And Get An Interval File Of All Inst
updated 4.4 years ago by 44k • written 10.1 years ago by ★ 3.9k
0
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0
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5.8k
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Answer: A: How To Find Upstream/Downstream Bound Features With A Chip-Seq Analysis In Galax
updated 4.4 years ago by 44k • written 10.1 years ago by ★ 3.9k
1
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1
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6.8k
views
Answer: A: Which Multiscale Genome Browser Is The Best At Visualizing Structural Variants?
updated 4.5 years ago by 44k • written 8.5 years ago by ★ 3.9k
1
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1
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3.3k
views
Answer: A: Quality metrics of ChIP-seq BAM files
updated 4.5 years ago by 44k • written 8.7 years ago by ★ 3.9k
2
votes
0
replies
2.5k
views
Answer: A: heatmap.2 keeps default settings despite specified
updated 4.6 years ago by 44k • written 9.0 years ago by ★ 3.9k
0
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2
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5.5k
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Answer: A: Reordering the bam file
updated 4.6 years ago by 44k • written 9.7 years ago by ★ 3.9k
0
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1
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3.1k
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Answer: A: SAM File target extraction
updated 4.6 years ago by 44k • written 9.8 years ago by ★ 3.9k
0
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0
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5.4k
views
Answer: A: How to convert bam-readcount output to BED-VAF format
6.6 years ago by Ming Tommy Tang ★ 3.9k
147 results • Page 1 of 3
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