Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : answers
2
votes
0
replies
802
views
Answer: Answer: --normalizeUsing RPGC
4 months ago by Devon Ryan 104k
3
votes
1
reply
1.0k
views
Answer: Answer: No differentially expressed genes after multiple testing correction in mice
12 months ago by Devon Ryan 104k
5
votes
0
replies
2.1k
views
Answer: Answer: Bioinformatics opportunities in Europe?
13 months ago by Devon Ryan 104k
2
votes
1
reply
660
views
Answer: Answer: Do edger, limma and deseq2 can be used with datasets from UMIs
24 months ago by Devon Ryan 104k
1
vote
0
replies
859
views
Answer: Answer: Interpreting output produced by computeMatrix reference-point
2.1 years ago by Devon Ryan 104k
2
votes
0
replies
842
views
Answer: Answer: deeptools plotprofile TSS and TES are very close
2.3 years ago by Devon Ryan 104k
2
votes
0
replies
852
views
Answer: Answer: multiBamSummary for unpaired end read?
2.4 years ago by Devon Ryan 104k
0
votes
1
reply
1.4k
views
Answer: Answer: Log2 Scale Deeptools
2.5 years ago by Devon Ryan 104k
3
votes
1
reply
1.6k
views
Answer: Answer: Errors when ajusting pvalue on R
2.5 years ago by Devon Ryan 104k
2
votes
0
replies
1.6k
views
Answer: Answer: Normalizing BAM Files
2.5 years ago by Devon Ryan 104k
1
vote
0
replies
1.8k
views
Answer: Answer: deeptools reference-point center
2.5 years ago by Devon Ryan 104k
2
votes
1
reply
1.7k
views
Answer: Answer: ? in cram files
2.6 years ago by Devon Ryan 104k
1
vote
2
replies
1.3k
views
Answer: Answer: Bedfile format deeptools
2.7 years ago by Devon Ryan 104k
1
vote
1
reply
857
views
Answer: Answer: Look at Different Locus in the Bam File
2.9 years ago by Devon Ryan 104k
1
vote
1
reply
2.3k
views
Answer: Answer: Remove prefix chrom:position before rsIDs
2.9 years ago by Devon Ryan 104k
4
votes
1
reply
4.5k
views
Answer: Answer: Installing samtools version 1.12
3.0 years ago by Devon Ryan 104k
0
votes
0
replies
616
views
Answer: Answer: Are [*.removed.sorted.bai] and [*.metrix.txt] needed for the next step?
3.0 years ago by Devon Ryan 104k
4
votes
1
reply
2.7k
views
Answer: Answer: deeptools 3.5 Segmentation fault:11
3.0 years ago by Devon Ryan 104k
0
votes
2
replies
2.9k
views
Answer: Answer: Deeptools, ComputeMatrix and plotProfile
3.1 years ago by Devon Ryan 104k
1
vote
0
replies
919
views
Answer: Answer: calculate area under curve for profile plot (deepTools)
3.1 years ago by Devon Ryan 104k
1
vote
0
replies
1.0k
views
Answer: Answer: Can I control the exposure time as a batch effect?
3.2 years ago by Devon Ryan 104k
1
vote
0
replies
1.4k
views
Answer: A: If I want to learn bioinformatics as a computer scientist, would it help to lear
3.2 years ago by Devon Ryan 104k
6
votes
0
replies
7.9k
views
Answer: A: Update to tbb (2021.1.1, conda-forge) breaks bowtie2 (bioconda)
3.2 years ago by Devon Ryan 104k
1
vote
1
reply
882
views
Answer: A: Calculating fold change...CONFUSION
3.3 years ago by Devon Ryan 104k
34
votes
5
replies
56k
views
Answer: A: How To Write Data In A Granges Object To A Bed File.
updated 3.3 years ago by 43k • written 10.4 years ago by 104k
2
votes
1
reply
3.1k
views
Answer: A: What are those black lines in my heatmap?
3.3 years ago by Devon Ryan 104k
1
vote
0
replies
5.7k
views
Answer: A: error with vcfutils when building consensus sequence with samtools and bcftools
updated 3.3 years ago by 43k • written 9.3 years ago by 104k
1
vote
0
replies
7.2k
views
Answer: A: ATAC-seq +4 -5 shift
3.4 years ago by Devon Ryan 104k
1
vote
0
replies
1.1k
views
Answer: C: Counting data with ht seq
3.4 years ago by Devon Ryan 104k
3
votes
1
reply
2.0k
views
Answer: A: Is it normal to obtain a perfectly dark blue "Per tile sequence quality" plot in
3.4 years ago by Devon Ryan 104k
1
vote
0
replies
2.5k
views
Answer: Answer: Are topics such as Metagenomics and Genome Editing a good start for someone new
updated 2.2 years ago by 43k • written 9.4 years ago by 104k
3
votes
1
reply
1.0k
views
Answer: Answer: Is there a stagewise testing procedure for DESeq2?
3.5 years ago by Devon Ryan 104k
2
votes
0
replies
1.3k
views
Answer: A: Converting to decimal values
3.5 years ago by Devon Ryan 104k
1
vote
1
reply
2.6k
views
Answer: A: How to count the number of codons in a frame or order using the equation?
3.5 years ago by Devon Ryan 104k
0
votes
0
replies
2.8k
views
Answer: A: DeepTools plotProfile y axis units?
3.5 years ago by Devon Ryan 104k
0
votes
1
reply
1.5k
views
Answer: A: MultiBamSummary for correlating ChIPseq datasets
3.6 years ago by Devon Ryan 104k
10
votes
1
reply
5.5k
views
Answer: A: Scaling vs normalization in bamCompare
3.6 years ago by Devon Ryan 104k
5
votes
2
replies
38k
views
Answer: A: how to convert a long fasta-file into many separate single fasta sequences
updated 3.6 years ago by 43k • written 9.9 years ago by 104k
4
votes
1
reply
6.4k
views
Answer: C: update salmon with conda
3.6 years ago by Devon Ryan 104k
3
votes
1
reply
2.2k
views
Answer: A: Comparing input read subtracted ChIP-read profiles using Deeptools2
3.6 years ago by Devon Ryan 104k
1
vote
1
reply
1.0k
views
Answer: A: Flip the heatmaps of ChIP-seq data to match TSS of +/- strand in deeptools
3.6 years ago by Devon Ryan 104k
0
votes
1
reply
964
views
Answer: A: Plot a dotted line to the start of the regions in computeMatrix, deepTools
3.6 years ago by Devon Ryan 104k
2
votes
0
replies
2.3k
views
Answer: A: Why STAR Aligner limits alignments to soft-masked regions (lowercase letters in
3.6 years ago by Devon Ryan 104k
0
votes
1
reply
1.1k
views
Answer: A: what the mean of Genomic content
3.7 years ago by Devon Ryan 104k
1
vote
1
reply
1.5k
views
Answer: C: What is "Possible polymerase run-on fragment"?
updated 3.7 years ago by 43k • written 5.9 years ago by 104k
2
votes
1
reply
17k
views
Answer: A: Benjamini+ Hochberg multiple testing p.adjust R
3.7 years ago by Devon Ryan 104k
2
votes
1
reply
2.5k
views
Answer: A: Samtools merge BAM files using snakemake
3.8 years ago by Devon Ryan 104k
2
votes
2
replies
2.3k
views
Answer: A: deepTools NPZ to PCA plot with modifications
3.8 years ago by Devon Ryan 104k
0
votes
0
replies
5.7k
views
Answer: C: Help with DeepTools
3.8 years ago by Devon Ryan 104k
5
votes
1
reply
1.3k
views
Answer: A: Which is the best approach to get DEG across one condition, in a three-factor de
3.8 years ago by Devon Ryan 104k
2,882 results • Page 1 of 58
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6