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0
votes
0
replies
273
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Bcftools consensus when reference is a deletion
consensus vcf
5 months ago by selplat21 ▴ 20
0
votes
0
replies
272
views
Bcftools Consensus - Choose Random Allele for Heterozygous Sites
bcftools
updated 6 months ago by 43k • written 6 months ago by ▴ 20
0
votes
0
replies
346
views
Sample based on allele frequency matching between two files
linkage
updated 12 months ago by 43k • written 12 months ago by ▴ 20
3
votes
2
replies
618
views
Removing or Setting pairs to NA based on conditions in another data frame (R)
R
22 months ago by selplat21 ▴ 20
2
votes
2
replies
774
views
Set random genotypes to missing in VCF file by individuals and sites
imputation
22 months ago by selplat21 ▴ 20
1
vote
5
replies
1.1k
views
Convert rows to columns delimited by each SNP ID
vcf linux bimbam
updated 22 months ago by 142k • written 22 months ago by ▴ 20
1
vote
2
replies
570
views
Extract Reads with Allele Type in IGV
Genomics alignment
updated 17 months ago by 43k • written 2.2 years ago by ▴ 20
1
vote
3
replies
765
views
Add Chromosome Breaks and Labels to Continuous x-axis in R
R
updated 2.3 years ago by 11k • written 2.3 years ago by ▴ 20
2
votes
1
reply
535
views
Filter VCF file by list of sites.
vcf filtering genomics
updated 2.3 years ago by 161k • written 2.3 years ago by ▴ 20
0
votes
3
replies
757
views
Loop for interval range based on chromosome sizes
chromosomes genomics
updated 15 months ago by 43k • written 2.3 years ago by ▴ 20
0
votes
0
replies
598
views
Modifying Genbank Contamination File for Bedtools
Genome-Assembly Linux
updated 2.7 years ago by 43k • written 2.8 years ago by ▴ 20
1
vote
1
reply
593
views
For loop to generate mean for each measurement by sex
R
updated 14 months ago by 43k • written 3.5 years ago by ▴ 20
1
vote
6
replies
882
views
Linear Model Loop in R
R
updated 12 months ago by 43k • written 3.5 years ago by ▴ 20
1
vote
1
reply
745
views
Imputation on low coverage samples
next-gen popgen imputation sequencing
3.5 years ago by selplat21 ▴ 20
1
vote
3
replies
839
views
Summing Chromosome Sizes
R sequencing
updated 3.6 years ago by 13k • written 3.6 years ago by ▴ 20
0
votes
0
replies
1.2k
views
RepeatModeler - Everything works except LTR Harvest
assembly genome next-gen sequencing
3.6 years ago by selplat21 ▴ 20
0
votes
5
replies
863
views
Making disjoint chromosomal sites contiguous with awk
awk assembly bash sequence
updated 12 months ago by 43k • written 3.6 years ago by ▴ 20
0
votes
9
replies
2.1k
views
Concatenation and Gzip Compression of Beagle Files Slow
sequencing next-gen unix bash
updated 3.7 years ago by 20 • written 3.8 years ago by ▴ 20
1
vote
6
replies
1.1k
views
Print based on character strings
R Command Line Unix
3.8 years ago by selplat21 ▴ 20
5
votes
7
replies
1.4k
views
For Loop to make new dataframe
R Excel
updated 3.8 years ago by 13k • written 3.8 years ago by ▴ 20
1
vote
2
replies
860
views
Significance testing on regression with binned data
R
3.9 years ago by selplat21 ▴ 20
2
votes
9
replies
997
views
Difference in means between sexes over time
R
3.9 years ago by selplat21 ▴ 20
1
vote
9
replies
1.1k
views
Boxplots and Time Series Data
R
4.1 years ago by selplat21 ▴ 20
1
vote
6
replies
764
views
Plotting time against quantitative variables in R
R time-series ecology
updated 4.3 years ago by 10k • written 4.3 years ago by ▴ 20
0
votes
3
replies
1.1k
views
How do I summarize coverage across many genomes to inform filtering cutoffs?
alignment coverage samtools genome next-gen
updated 4.3 years ago by ▴ 330 • written 4.3 years ago by ▴ 20
3
votes
3
replies
812
views
Remove and Substitute Fasta Header
fasta alignment
4.6 years ago by selplat21 ▴ 20
0
votes
5
replies
2.3k
views
EOF Marker absent .bam.pbi files
sequencing Assembly
updated 4.9 years ago by 43k • written 4.9 years ago by ▴ 20
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