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Comment: Comment: Adata.raw.X in LIANA, something wrong with conversion from Seurat to adata in py
7 days ago by fracarb8 ★ 1.6k
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408
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Comment: Comment: Adata.raw.X in LIANA, something wrong with conversion from Seurat to adata in py
8 days ago by fracarb8 ★ 1.6k
2
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402
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Comment: Comment: I'm new to cell ranger. Can single cells prepared with a protocol other than the
4 weeks ago by fracarb8 ★ 1.6k
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340
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Comment: Comment: Addmetadata to seurat obj
5 weeks ago by fracarb8 ★ 1.6k
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333
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Comment: Comment: Ubuntu storage space is decreasing automatically
5 weeks ago by fracarb8 ★ 1.6k
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331
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Comment: Comment: cloupe to 10x format
6 weeks ago by fracarb8 ★ 1.6k
2
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1
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374
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Comment: Comment: Seeking help with Tcga Target Gtex Expected Count Data
9 weeks ago by fracarb8 ★ 1.6k
2
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1
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314
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Comment: Comment: compare dimplot(single cell)
9 weeks ago by fracarb8 ★ 1.6k
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564
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Comment: Comment: Is there anyone who downloaded Azimuth packges?
9 weeks ago by fracarb8 ★ 1.6k
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564
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Comment: Comment: Is there anyone who downloaded Azimuth packges?
9 weeks ago by fracarb8 ★ 1.6k
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1
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564
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Comment: Comment: Is there anyone who downloaded Azimuth packges?
9 weeks ago by fracarb8 ★ 1.6k
1
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328
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Comment: Comment: Seeking Guidance on How to Annotate Unusual Cell Populations in Single-Cell Data
11 weeks ago by fracarb8 ★ 1.6k
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331
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Comment: Comment: How to manually sort the legend of gseaplot2 (enrichplot, clusterProfiler) resul
11 weeks ago by fracarb8 ★ 1.6k
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1
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445
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Comment: Comment: DE Analysis Between A Subset Seurat Object Versus Original Seurat Object
12 weeks ago by fracarb8 ★ 1.6k
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1
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599
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Comment: Comment: Is it necessary to integrate again samples when subclustering
4 months ago by fracarb8 ★ 1.6k
2
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1
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1.0k
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Comment: Comment: How to remove center population from seurat cluster
5 months ago by fracarb8 ★ 1.6k
2
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2
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1.0k
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Comment: Comment: How to remove center population from seurat cluster
5 months ago by fracarb8 ★ 1.6k
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1
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455
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Comment: Comment: convert dataframe R
5 months ago by fracarb8 ★ 1.6k
2
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2.6k
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Comment: Comment: Cellcyclescoring did not work in Seurat V5
5 months ago by fracarb8 ★ 1.6k
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1
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500
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Comment: Comment: labelling the clusters from the CD4 T cell scRNAseq data
5 months ago by fracarb8 ★ 1.6k
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1
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998
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Comment: Comment: Unable to save plots in R using jpeg() or png()
7 months ago by fracarb8 ★ 1.6k
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2.7k
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Comment: Comment: Code for reading h5ad files in R
7 months ago by fracarb8 ★ 1.6k
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433
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Comment: Comment: Monocle3 garnett
7 months ago by fracarb8 ★ 1.6k
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570
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Comment: Comment: How to determine the total count for each gene in lymphotype B
7 months ago by fracarb8 ★ 1.6k
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1
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570
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Comment: Comment: How to determine the total count for each gene in lymphotype B
7 months ago by fracarb8 ★ 1.6k
1
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1
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407
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Comment: Comment: Is it normal if regress out the cell cycle effects but the DEGs are quite the si
7 months ago by fracarb8 ★ 1.6k
1
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1
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658
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Comment: Comment: Dotplot error: subscript out of bound
8 months ago by fracarb8 ★ 1.6k
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1.3k
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Comment: Comment: Selecting MOUSE gene set libraries in Enrichr
8 months ago by fracarb8 ★ 1.6k
0
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1
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1.3k
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Comment: Comment: Selecting MOUSE gene set libraries in Enrichr
8 months ago by fracarb8 ★ 1.6k
1
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1
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679
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Comment: Comment: Converting scMultiome data to loom using SEURAT
8 months ago by fracarb8 ★ 1.6k
1
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1
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905
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Comment: Comment: Optimal number of features to use when integrate multi samples by Seurat in sc
8 months ago by fracarb8 ★ 1.6k
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1.6k
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Comment: Comment: Negative Expression in RNA Assay on Dot Plot After SCT Transform
8 months ago by fracarb8 ★ 1.6k
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0
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1.0k
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Comment: Comment: Housekeeping genes scRNA seq
10 months ago by fracarb8 ★ 1.6k
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2
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1.6k
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Comment: Comment: scrna seq analysis - doublets
10 months ago by fracarb8 ★ 1.6k
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0
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938
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Comment: Comment: How to introduce normalized and scaled seurat data into monocle 3?
11 months ago by fracarb8 ★ 1.6k
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0
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986
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Comment: Comment: Seurat PlotClusterTree together with heatmap of gene expression
12 months ago by fracarb8 ★ 1.6k
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0
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602
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Comment: Comment: Remove string from Seurat Object
13 months ago by fracarb8 ★ 1.6k
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0
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21k
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Comment: Comment: How to get subset of a Seurat object based on metadata?
13 months ago by fracarb8 ★ 1.6k
1
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0
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1.2k
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Comment: Comment: Getting unspliced counts for scRNA-seq data generated from cellranger aggr pipel
14 months ago by fracarb8 ★ 1.6k
0
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1
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2.2k
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Comment: Comment: How to solve a possible memory issues with Seurat and IntegrateData step?
15 months ago by fracarb8 ★ 1.6k
0
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1
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1.1k
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Comment: Comment: How to use ClusterProfiler
15 months ago by fracarb8 ★ 1.6k
1
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0
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413
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Comment: Comment: Font name used in dittoSeq?
15 months ago by fracarb8 ★ 1.6k
2
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1
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641
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Comment: Comment: R bug during normalize
15 months ago by fracarb8 ★ 1.6k
1
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0
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766
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Comment: Comment: HLA typing with archasHLA - DNA seq?
16 months ago by fracarb8 ★ 1.6k
1
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0
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873
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Comment: Comment: bash script error to copy files from multiple directories to one directory
17 months ago by fracarb8 ★ 1.6k
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0
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1.2k
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Comment: Comment: How can I convert -log10 (p-value) to p-value?
18 months ago by fracarb8 ★ 1.6k
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0
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834
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Comment: Comment: How to deal with "///" in between gene symbols?
18 months ago by fracarb8 ★ 1.6k
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1
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1.7k
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Comment: Comment: Tuning seurat integration strength to prevent overcorrection
20 months ago by fracarb8 ★ 1.6k
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0
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2.2k
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Comment: Comment: Any script that can produce different mutations of protein sequences at specifie
21 months ago by fracarb8 ★ 1.6k
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2
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2.4k
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Comment: Comment: scRNA read count is in csv, not '.h5ad' format, do I need to convert it into Ann
22 months ago by fracarb8 ★ 1.6k
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