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359
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Answer: Answer: cloupe to 10x format
8 weeks ago by fracarb8 ★ 1.7k
2
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1
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523
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Answer: Answer: change order of violin plots in ggplot2
updated 10 weeks ago by 44k • written 10 weeks ago by ★ 1.7k
1
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1
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959
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Answer: Answer: Subsetting Seurat object based on list of cell barcodes
10 weeks ago by fracarb8 ★ 1.7k
0
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0
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566
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Answer: Answer: ArchR Doublet Inference to Signac
10 weeks ago by fracarb8 ★ 1.7k
3
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0
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303
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Answer: Answer: Doplot to display 2 metadata variables
10 weeks ago by fracarb8 ★ 1.7k
0
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0
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385
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Answer: Answer: Error in changing the annotation color of pheatmap
11 weeks ago by fracarb8 ★ 1.7k
0
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0
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677
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Answer: Answer: Downsampling of cells in scRNAseq DE analysis
3 months ago by fracarb8 ★ 1.7k
1
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0
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337
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Answer: Answer: getting error when transfer labels for my scRNAseq data using FindTransferAnchor
3 months ago by fracarb8 ★ 1.7k
0
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0
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384
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Answer: Answer: Speed up FindClusters execution?
3 months ago by fracarb8 ★ 1.7k
1
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1
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2.1k
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Answer: Answer: JoinLayers to find markers in merged or integrated analysis in seurat
3 months ago by fracarb8 ★ 1.7k
0
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0
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683
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Answer: Answer: Monocle3 gene expression dot plot with a cell data set object (need help with re
4 months ago by fracarb8 ★ 1.7k
2
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1
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465
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Answer: Answer: convert dataframe R
5 months ago by fracarb8 ★ 1.7k
0
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0
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2.0k
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Answer: Answer: DoubletFinder for Python?
6 months ago by fracarb8 ★ 1.7k
2
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0
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970
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Answer: Answer: How to 'organize' multiple umap/genes generates with Seurat `FeaturePlot`in a sp
7 months ago by fracarb8 ★ 1.7k
1
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0
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446
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Answer: Answer: seurat-creating heatmaps
7 months ago by fracarb8 ★ 1.7k
2
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1
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1.3k
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Answer: Answer: Bioinformatics software for single cell omics
7 months ago by fracarb8 ★ 1.7k
0
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1
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2.9k
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Answer: Answer: Code for reading h5ad files in R
7 months ago by fracarb8 ★ 1.7k
1
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0
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638
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Answer: Answer: How to get ncol = nrow?
updated 8 months ago by 44k • written 8 months ago by ★ 1.7k
1
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0
replies
1.4k
views
Answer: Answer: Is there an easy to modify the subplot titles in DimPlot (Seurat)?
updated 8 months ago by 44k • written 8 months ago by ★ 1.7k
2
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0
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813
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Answer: Answer: Add samples IDs to Seurat object when integrating different samples to do differ
updated 8 months ago by 44k • written 8 months ago by ★ 1.7k
1
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0
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1.6k
views
Answer: Answer: How do I install DSSP?
8 months ago by fracarb8 ★ 1.7k
2
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2
replies
1.4k
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Answer: Answer: Selecting MOUSE gene set libraries in Enrichr
8 months ago by fracarb8 ★ 1.7k
1
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0
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723
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Answer: Answer: UMAP graph using DimPlot pre/post integration
8 months ago by fracarb8 ★ 1.7k
0
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1
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1.7k
views
Answer: Answer: Negative Expression in RNA Assay on Dot Plot After SCT Transform
9 months ago by fracarb8 ★ 1.7k
0
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0
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2.8k
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Answer: Answer: InferCNV results interpretation
9 months ago by fracarb8 ★ 1.7k
1
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0
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1.0k
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Answer: Answer: Can I using scVI to integrate data, then using R to conduct following analysis?
9 months ago by fracarb8 ★ 1.7k
1
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0
replies
1.7k
views
Answer: Answer: Change transparency/alpha in seurat's vlnPlot()
10 months ago by fracarb8 ★ 1.7k
1
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0
replies
580
views
Answer: Answer: HeatMap, R, Rownames
10 months ago by fracarb8 ★ 1.7k
0
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1
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870
views
Answer: Answer: How to obtain cell-cell interaction list
10 months ago by fracarb8 ★ 1.7k
5
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1
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2.6k
views
Answer: Answer: In Scanpy, how to RDS file and merge it with other Scanpy objects.
11 months ago by fracarb8 ★ 1.7k
7
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0
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5.9k
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Answer: Answer: Convert Human to Mouse Symbols
11 months ago by fracarb8 ★ 1.7k
0
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0
replies
813
views
Answer: Answer: Uploading 10x Data into R for Monocle 3
11 months ago by fracarb8 ★ 1.7k
0
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0
replies
701
views
Answer: Answer: What kind of statistical test does Cellranger count use?
11 months ago by fracarb8 ★ 1.7k
2
votes
0
replies
4.2k
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Answer: Answer: Seurat 'DoHeatmap()' hierarchical clustering
12 months ago by fracarb8 ★ 1.7k
0
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1
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21k
views
Answer: Answer: How to get subset of a Seurat object based on metadata?
14 months ago by fracarb8 ★ 1.7k
0
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1
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1.2k
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Answer: Answer: Getting unspliced counts for scRNA-seq data generated from cellranger aggr pipel
14 months ago by fracarb8 ★ 1.7k
0
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1
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2.2k
views
Answer: Answer: How to solve a possible memory issues with Seurat and IntegrateData step?
15 months ago by fracarb8 ★ 1.7k
0
votes
1
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687
views
Answer: Answer: exchange the monocle data with Seurat
15 months ago by fracarb8 ★ 1.7k
2
votes
1
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883
views
Answer: Answer: bash script error to copy files from multiple directories to one directory
17 months ago by fracarb8 ★ 1.7k
1
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0
replies
582
views
Answer: Answer: Extract Monocle2 "State" for Seurat
18 months ago by fracarb8 ★ 1.7k
0
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1
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1.7k
views
Answer: Answer: Tuning seurat integration strength to prevent overcorrection
20 months ago by fracarb8 ★ 1.7k
0
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0
replies
761
views
Answer: Answer: What is the best way to process a metadata file that SEURAT can read?
21 months ago by fracarb8 ★ 1.7k
1
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1
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3.3k
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Answer: Answer: SCTransform and differential gene expression
21 months ago by fracarb8 ★ 1.7k
0
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0
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980
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Answer: Answer: Clustered, annotated dotplot to scRNA-Seq data
23 months ago by fracarb8 ★ 1.7k
1
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1
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2.1k
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Answer: Answer: ESTIMATE tumor purity
23 months ago by fracarb8 ★ 1.7k
1
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1
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2.9k
views
Answer: Answer: What to do with Seurat metadata and counts in separate text files?
24 months ago by fracarb8 ★ 1.7k
2
votes
1
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1.1k
views
Answer: Answer: How to add Ensembl id to cluster.markers in Seurat
24 months ago by fracarb8 ★ 1.7k
2
votes
0
replies
1.1k
views
Answer: Answer: Error on R shiny app metaOmics; object %AND% not found
24 months ago by fracarb8 ★ 1.7k
0
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0
replies
1.7k
views
Answer: Answer: Automatic rename of filenames with bash script
2.0 years ago by fracarb8 ★ 1.7k
1
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1
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2.0k
views
Answer: Answer: Normalization of RNASeq counts with a reference gene (/genes)
2.1 years ago by fracarb8 ★ 1.7k
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