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1
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5
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Which VCF file to select for generating Multiple sequence alignment of a gene?
VCF GATK sequence alignment
20 months ago by anikcropscience ▴ 230
0
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0
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1.5k
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Comment: Comment: Converting VCF file to table format
21 months ago by anikcropscience ▴ 230
0
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1
reply
1.5k
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Comment: Comment: Converting VCF file to table format
21 months ago by anikcropscience ▴ 230
0
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1
reply
1.5k
views
Comment: Comment: Converting VCF file to table format
22 months ago by anikcropscience ▴ 230
0
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0
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871
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Comment: Comment: How to do clustering of SNPs according to linkage disequilibrium (r2) values?
22 months ago by anikcropscience ▴ 230
0
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0
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1.5k
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Comment: Comment: Converting VCF file to table format
22 months ago by anikcropscience ▴ 230
2
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7
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1.5k
views
Converting VCF file to table format
SNP bash VCF R genome
21 months ago by anikcropscience ▴ 230
0
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0
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1.3k
views
Comment: Comment: FastaAlternateReferenceMaker is not outputting fasta sequence for multiple sampl
22 months ago by anikcropscience ▴ 230
1
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2
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1.3k
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FastaAlternateReferenceMaker is not outputting fasta sequence for multiple samples from a VCF
GATK SNP fasta sequence alignment
22 months ago by anikcropscience ▴ 230
2
votes
0
replies
719
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How to estimate Watterson's Theta per population from ANGSD output?
SNP theta ANGSD nucleotide diversity genetic
23 months ago by anikcropscience ▴ 230
0
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0
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1.3k
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Comment: Comment: How to obtain 200 bp flanking sequence from both sides of BLAST search?
23 months ago by anikcropscience ▴ 230
7
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7
replies
1.3k
views
How to obtain 200 bp flanking sequence from both sides of BLAST search?
sequence blast genome nucleotide
updated 23 months ago by 15k • written 23 months ago by ▴ 230
0
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0
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1.3k
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Comment: Comment: How to obtain 200 bp flanking sequence from both sides of BLAST search?
23 months ago by anikcropscience ▴ 230
0
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0
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1.3k
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Comment: Comment: How to obtain 200 bp flanking sequence from both sides of BLAST search?
23 months ago by anikcropscience ▴ 230
0
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0
replies
556
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Comment: Comment: How to subset a multisample VCF file for performing selection scan analysis?
2.0 years ago by anikcropscience ▴ 230
0
votes
2
replies
556
views
How to subset a multisample VCF file for performing selection scan analysis?
bash SNP vcftools genomics
updated 11 months ago by 44k • written 2.0 years ago by ▴ 230
0
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0
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1.9k
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Comment: Comment: How to perform Allele balance on a VCF file from GATK?
2.2 years ago by anikcropscience ▴ 230
0
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7
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1.9k
views
How to perform Allele balance on a VCF file from GATK?
bcftools SNP VCFtools GATK
updated 11 months ago by 44k • written 2.2 years ago by ▴ 230
0
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0
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1.9k
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Comment: Comment: How to perform Allele balance on a VCF file from GATK?
2.2 years ago by anikcropscience ▴ 230
0
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0
replies
1.9k
views
Comment: Comment: How to perform Allele balance on a VCF file from GATK?
2.2 years ago by anikcropscience ▴ 230
0
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0
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1.9k
views
Comment: Comment: How to perform Allele balance on a VCF file from GATK?
2.2 years ago by anikcropscience ▴ 230
0
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0
replies
327
views
How to understand improvement in genome annotation?
Hi-C genome pacbio diploid annotation
2.2 years ago by anikcropscience ▴ 230
2
votes
0
replies
379
views
Should one concatenate two haplotype genome assemblies into one assembly?
PacBio genome-assembly whole-genome-sequence Hi-C
updated 15 months ago by 44k • written 2.3 years ago by ▴ 230
0
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0
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4.6k
views
Comment: Comment: How to run MD5 check for many fastq files in subdirectories?
2.3 years ago by anikcropscience ▴ 230
8
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12
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4.6k
views
How to run MD5 check for many fastq files in subdirectories?
sequencing MD5 genome Hiseq Illumina
updated 2.3 years ago by 21k • written 2.3 years ago by ▴ 230
1
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0
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4.6k
views
Comment: Comment: How to run MD5 check for many fastq files in subdirectories?
2.3 years ago by anikcropscience ▴ 230
0
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0
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4.6k
views
Comment: Comment: How to run MD5 check for many fastq files in subdirectories?
2.3 years ago by anikcropscience ▴ 230
0
votes
2
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4.6k
views
Comment: Comment: How to run MD5 check for many fastq files in subdirectories?
2.3 years ago by anikcropscience ▴ 230
0
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1
reply
4.6k
views
Comment: Comment: How to run MD5 check for many fastq files in subdirectories?
2.3 years ago by anikcropscience ▴ 230
0
votes
3
replies
863
views
How to perform Linkage Disequilibrium analysis for significantly associated K-mers?
next-gen genome snp assembly
updated 2.3 years ago by • 0 • written 3.2 years ago by ▴ 230
0
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0
replies
472
views
How to manually curate a genome assembly?
genome-assembly alignment dotplot whole-genome-sequence
updated 15 months ago by 44k • written 2.3 years ago by ▴ 230
0
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0
replies
879
views
Comment: Comment: How to improve a genome assembly using Dovetail and PacBio assembly?
2.3 years ago by anikcropscience ▴ 230
1
vote
2
replies
879
views
How to improve a genome assembly using Dovetail and PacBio assembly?
genome HiFi PacBio assembly Dovetail
2.3 years ago by anikcropscience ▴ 230
0
votes
0
replies
433
views
How to deal with heterozygous genome assemblies for inversions, INDELs?
genome sequence SV heterozygosity assembly
2.4 years ago by anikcropscience ▴ 230
0
votes
1
reply
858
views
Comment: Comment: Blast command line pipeline not working
2.4 years ago by anikcropscience ▴ 230
0
votes
3
replies
858
views
Blast command line pipeline not working
bash-scripting gene BLAST
updated 2.4 years ago by ▴ 610 • written 2.4 years ago by ▴ 230
0
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0
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4.8k
views
Comment: Comment: How to retrieve fasta sequence after local blast?
2.5 years ago by anikcropscience ▴ 230
0
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1
reply
4.8k
views
Comment: Comment: How to retrieve fasta sequence after local blast?
2.5 years ago by anikcropscience ▴ 230
0
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0
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4.8k
views
Comment: Comment: How to retrieve fasta sequence after local blast?
2.5 years ago by anikcropscience ▴ 230
3
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6
replies
4.8k
views
How to retrieve fasta sequence after local blast?
genome sequence blast
updated 2.4 years ago by ★ 2.5k • written 2.5 years ago by ▴ 230
0
votes
0
replies
398
views
How to extract homologous sequence data from multiple .vcf.gz files?
sequence gene homologous vcf
2.5 years ago by anikcropscience ▴ 230
0
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0
replies
1.5k
views
Comment: Comment: Socat not found in the /usr/bin folder in MacOS
2.5 years ago by anikcropscience ▴ 230
0
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2
replies
1.5k
views
Socat not found in the /usr/bin folder in MacOS
Socat bash MacOS
2.5 years ago by anikcropscience ▴ 230
0
votes
0
replies
992
views
How to perform Synteny analysis for a single gene?
alignment SNP genome gene R
2.9 years ago by anikcropscience ▴ 230
0
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0
replies
1.2k
views
How to plot rarefaction curves in R using Vegan?
gene richness rarefaction R
3.0 years ago by anikcropscience ▴ 230
0
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0
replies
2.7k
views
Comment: Comment: How to estimate the percent phenotypic variation explained by the significant SN
3.0 years ago by anikcropscience ▴ 230
0
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0
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2.7k
views
Comment: Comment: How to estimate the percent phenotypic variation explained by the significant SN
3.0 years ago by anikcropscience ▴ 230
0
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3
replies
2.7k
views
How to estimate the percent phenotypic variation explained by the significant SNP from a GWAS study?
GWAS variance statistics SNP R-studio
3.0 years ago by anikcropscience ▴ 230
0
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1
reply
3.2k
views
Comment: Comment: How to produce a heatmap by keeping the original data and a log color scale?
3.0 years ago by anikcropscience ▴ 230
2
votes
8
replies
3.2k
views
How to produce a heatmap by keeping the original data and a log color scale?
R heatmap ggplot2 visualization
updated 3.0 years ago by 21k • written 3.0 years ago by ▴ 230
180 results • Page 2 of 4
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