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1
vote
2
replies
1.3k
views
Absolute segmentation file result
sequencing alignment genome
written 4.9 years ago by ▴ 50
1
vote
2
replies
1.1k
views
question about translocation of SV caller output
sequencing genome
updated 22 months ago by ▴ 120 • written 4.8 years ago by ▴ 50
3
votes
1
reply
794
views
is there any other value for evaluating Sequence Mapping??
sequencing alignment assembly Assembly
updated 3.5 years ago by 20 • written 5.1 years ago by ▴ 50
0
votes
1
reply
648
views
why snp class classified into 6 class?
snp
3.6 years ago by 9521ljh ▴ 50
0
votes
2
replies
510
views
allele specific mutation ?
sequencing next-gen
3.7 years ago by 9521ljh ▴ 50
0
votes
1
reply
842
views
Variant allele frequency with copy number
sequencing SNP
3.8 years ago by 9521ljh ▴ 50
0
votes
0
replies
529
views
Annovar annotation with specific ENST region ( retain_intron exon)
RNA-Seq next-gen
4.0 years ago by 9521ljh ▴ 50
2
votes
2
replies
644
views
Methylation normalization between samples from different platform
gene
updated 4.1 years ago by 82k • written 4.1 years ago by ▴ 50
4
votes
1
reply
685
views
Methylation analysis if no normal control
rna-seq
4.1 years ago by 9521ljh ▴ 50
0
votes
1
reply
734
views
Cell line RNA differentially expression gene
RNA-Seq
updated 4.1 years ago by 88k • written 4.1 years ago by ▴ 50
0
votes
0
replies
1.2k
views
RNA log2 fold change in FPKM
RNA-Seq
4.1 years ago by 9521ljh ▴ 50
0
votes
5
replies
823
views
How to do if no normal control for RNA
next-gen RNA-Seq
updated 4.2 years ago by 19k • written 4.2 years ago by ▴ 50
0
votes
2
replies
894
views
Comparing RNA expression between different tissue type, but same Cancer.
RNA-Seq
updated 4.3 years ago by 19k • written 4.3 years ago by ▴ 50
3
votes
1
reply
2.6k
views
GeneHancer Database download link
sequencing next-gen
updated 4.3 years ago by 20 • written 4.3 years ago by ▴ 50
0
votes
2
replies
1.2k
views
RNA-seq batch effect remove
RNA-Seq sequencing
updated 4.3 years ago by 20 • written 4.4 years ago by ▴ 50
0
votes
1
reply
692
views
whole genome sequencing analysis for one sample
genome rna-seq
updated 4.3 years ago by ▴ 1000 • written 4.3 years ago by ▴ 50
4
votes
3
replies
1.3k
views
Circos plot tool
next-gen sequence R
updated 4.3 years ago by 20 • written 4.3 years ago by ▴ 50
0
votes
1
reply
500
views
DAVID multiple input
gene next-gen sequencing
4.4 years ago by 9521ljh ▴ 50
2
votes
3
replies
813
views
Predict function by Mutation?
SNP gene sequencing next-gen
updated 4.4 years ago by 88k • written 4.4 years ago by ▴ 50
0
votes
2
replies
1.1k
views
Fusion orientation make sense or not
sequencing sequence next-gen gene
updated 4.5 years ago by • 0 • written 4.5 years ago by ▴ 50
3
votes
2
replies
1.2k
views
mRNA, ceRNA, miRNA network database
rna-seq R next-gen
updated 4.5 years ago by 19k • written 4.5 years ago by ▴ 50
6
votes
4
replies
832
views
is there any database that show RNA false positive?
RNA-Seq next-gen sequencing
updated 4.5 years ago by ★ 4.1k • written 4.6 years ago by ▴ 50
0
votes
2
replies
2.0k
views
extract discordant,split reads from BAM file
next-gen sequencing sequence
updated 4.6 years ago by 35k • written 4.6 years ago by ▴ 50
4
votes
1
reply
677
views
How to know does DNA variant sequencing (eg. somatic variant) affect to Protein structure?
RNA-Seq rna-seq sequence sequencing next-gen
updated 4.6 years ago by ▴ 380 • written 4.6 years ago by ▴ 50
1
vote
1
reply
721
views
why telomere position do not have any reference ?
next-gen sequencing alignment
updated 4.6 years ago by 20 • written 4.8 years ago by ▴ 50
4
votes
1
reply
720
views
RNA and DNA variant difference
next-gen rna-seq genome sequencing
4.6 years ago by 9521ljh ▴ 50
0
votes
3
replies
1.7k
views
How to check exon count of gene?
sequence sequencing next-gen
updated 4.7 years ago by ▴ 180 • written 4.7 years ago by ▴ 50
0
votes
1
reply
1.0k
views
Does TCGA rna-seq data include fusion gene expression?
sequencing RNA-Seq sequence next-gen
updated 4.7 years ago by 88k • written 4.7 years ago by ▴ 50
9
votes
4
replies
2.3k
views
hg19 exon, intron, UTR region
sequencing next-gen
updated 4.7 years ago by 162k • written 4.7 years ago by ▴ 50
5
votes
2
replies
1.1k
views
gene transcription direction
sequencing genome gene
updated 4.7 years ago by 44k • written 4.7 years ago by ▴ 50
3
votes
1
reply
859
views
where to get Gene strand file?
sequence gene
updated 4.7 years ago by 82k • written 4.7 years ago by ▴ 50
5
votes
5
replies
2.2k
views
where to get Whole Genome Sequencing of Cell line?
genome sequencing sequence
updated 4.7 years ago by ★ 3.2k • written 4.7 years ago by ▴ 50
3
votes
2
replies
786
views
What is best tool for Cohort data of DNA?
next-gen sequencing sequence gene
updated 4.8 years ago by ★ 1.3k • written 4.8 years ago by ▴ 50
0
votes
4
replies
1.1k
views
Why samtools depth error
sequence gene sequencing
4.8 years ago by 9521ljh ▴ 50
0
votes
5
replies
1.4k
views
extract region from the bam file
assembly sequencing genome
4.9 years ago by 9521ljh ▴ 50
2
votes
2
replies
722
views
How to mapping DNA read pairs to reference according to particular gene ?
genome next-gen sequencing gene assembly
4.9 years ago by 9521ljh ▴ 50
0
votes
1
reply
596
views
Varscan parameters(options) value
genome sequencing sequence snp
updated 5.0 years ago by 20 • written 5.1 years ago by ▴ 50
0
votes
0
replies
621
views
GATK data-preprocessing omit Indelrealignment step
GATK Indelrealignment
5.0 years ago by 9521ljh ▴ 50
2
votes
3
replies
1.7k
views
About GATK data-preprocessing workflow
assembly next-gen GATK Preprocessing uBAM
updated 5.0 years ago by 3.9k • written 5.0 years ago by ▴ 50
2
votes
1
reply
2.6k
views
ABSOLUTE output interpretation
ABSOLUTE purity ploidy SCNA
updated 5.0 years ago by 88k • written 5.0 years ago by ▴ 50
10
votes
9
replies
6.5k
views
6 follow
very confused with GC bias
fastqc
updated 5.0 years ago by ★ 2.5k • written 5.1 years ago by ▴ 50
4
votes
2
replies
819
views
is there exist GATK pre-processing(WGS) Script??
genome alignment sequencing sequence
5.1 years ago by 9521ljh ▴ 50
4
votes
2
replies
1.4k
views
Interpretation Fastq file format (paired end)
sequence sequencing alignment
updated 5.1 years ago by 5.3k • written 5.1 years ago by ▴ 50
1
vote
1
reply
2.7k
views
How to split Fastq file into Forward, reverse fastq file.
gene sequencing sequence genome
5.1 years ago by 9521ljh ▴ 50
3
votes
1
reply
674
views
NCBI location name
genome snp sequence sequencing gene
updated 5.1 years ago by 11k • written 5.1 years ago by ▴ 50
3
votes
1
reply
612
views
Get rid of Low Quality Bases In A Sequence, and which be replaced on removed place?
rna-seq snp sequence sequencing
updated 5.1 years ago by 47k • written 5.1 years ago by ▴ 50
4
votes
3
replies
1.2k
views
how to extract only exon from copynumber called by Varscan2?
sequence sequencing next-gen SNP
5.1 years ago by 9521ljh ▴ 50
2
votes
4
replies
975
views
what is next step to find the disease?
gene next-gen sequencing sequence
updated 5.1 years ago by 13k • written 5.1 years ago by ▴ 50
0
votes
1
reply
693
views
is it possible gene pathway analysis according to mutation type?
sequencing alignment SNP
5.1 years ago by 9521ljh ▴ 50
0
votes
3
replies
2.0k
views
How to extract exon from bam file
SNP genome sequencing sequence
updated 5.1 years ago by ★ 2.4k • written 5.1 years ago by ▴ 50
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