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3
votes
6
replies
355
views
Problem in getting geo file through GEOQUERY
geoquery Geo
updated 5 days ago by 44k • written 6 days ago by ▴ 120
1
vote
5
replies
559
views
DYH17 Structure Prediction
BLAST Protein-Structure-Prediction
4 weeks ago by anasjamshed ▴ 120
2
votes
1
reply
312
views
Pediococcus acidilactici sequence analysis
BLAST Gene-Ontology
updated 5 weeks ago by 44k • written 5 weeks ago by ▴ 120
0
votes
0
replies
230
views
Interpret mean variance trend plot
R voom
3 months ago by anasjamshed ▴ 120
16
votes
29
replies
1.9k
views
Gene labels problem in enhanced volcano
R ggplot2 enhancedvolcano
updated 3 months ago by ★ 27k • written 3 months ago by ▴ 120
1
vote
4
replies
362
views
Absolute logfc and Pvalue for statistical calculation
volcano-plot logfc
updated 3 months ago by 44k • written 3 months ago by ▴ 120
5
votes
5
replies
582
views
Example MAF Files
MAF
updated 5 months ago by 44k • written 5 months ago by ▴ 120
0
votes
2
replies
401
views
Combine GEO ids
NCBI Geo
updated 11 weeks ago by 44k • written 6 months ago by ▴ 120
1
vote
4
replies
508
views
Analyze with Geo2R
R NCBI
6 months ago by anasjamshed ▴ 120
6
votes
1
reply
467
views
16S vs shotgun tools
metagenomics
10 months ago by anasjamshed ▴ 120
5
votes
5
replies
935
views
How to check the quality of fasta file
fastqc fasta
updated 10 months ago by 82k • written 10 months ago by ▴ 120
2
votes
5
replies
648
views
kraken in windows
kraken
updated 10 months ago by 44k • written 10 months ago by ▴ 120
3
votes
3
replies
610
views
scrna pipeline
scRNA-seq
updated 10 months ago by ▴ 90 • written 10 months ago by ▴ 120
4
votes
14
replies
2.3k
views
RSEM implementation
RSEM
updated 11 months ago by 44k • written 11 months ago by ▴ 120
0
votes
0
replies
335
views
Identify SNPs with Fst estimates > 0.9 and annotate them
snpeff fst SNP
12 months ago by anasjamshed ▴ 120
2
votes
5
replies
1.0k
views
vcftools on 2 snpeff vcf files
snpeff vcftools
updated 11 months ago by 44k • written 13 months ago by ▴ 120
1
vote
3
replies
747
views
SnpEff eff Error
SnpEff Galaxy
updated 12 months ago by ★ 2.4k • written 13 months ago by ▴ 120
2
votes
3
replies
556
views
Variants that are different between the clown and control
Difference VCF
updated 13 months ago by 142k • written 13 months ago by ▴ 120
1
vote
3
replies
590
views
Error while running GATK4 Mutect2 in Galaxy
Mutect2 GATK4
updated 13 months ago by 162k • written 13 months ago by ▴ 120
3
votes
5
replies
875
views
Reference genome of python molurus bivittatus
bivittatus python molurus
updated 13 months ago by 142k • written 13 months ago by ▴ 120
1
vote
1
reply
1.2k
views
Installing pybedtools in Windows 10
pybedtools
updated 13 months ago by 19k • written 13 months ago by ▴ 120
2
votes
6
replies
909
views
problem with bedtools getfasta
getfasta bedtools
13 months ago by anasjamshed ▴ 120
2
votes
3
replies
642
views
Problem while executing bedtools sort
genome bedtools
updated 13 months ago by 44k • written 13 months ago by ▴ 120
1
vote
3
replies
1.0k
views
Is it possible to draw volcano plot without p values
p-value log2fold plot
updated 13 months ago by 44k • written 13 months ago by ▴ 120
0
votes
4
replies
694
views
Problem in retrieving geo data sets
geo
14 months ago by anasjamshed ▴ 120
3
votes
6
replies
1.1k
views
Pig Reference Genome
Genome
updated 14 months ago by 21k • written 14 months ago by ▴ 120
0
votes
0
replies
399
views
MethylR on bam files Gives Error
MethylR bismark
14 months ago by anasjamshed ▴ 120
2
votes
8
replies
1.4k
views
Use bismark files to run methylKit
bismark R
14 months ago by anasjamshed ▴ 120
2
votes
2
replies
2.4k
views
bcftools annotate -a
bcftools VCF
updated 11 months ago by 44k • written 15 months ago by ▴ 120
0
votes
2
replies
588
views
Analyze 2 or 3 different datasets from GEO2R
Microarray GEO
15 months ago by anasjamshed ▴ 120
1
vote
9
replies
1.3k
views
Split trio vcf file
bcftools VCF
updated 15 months ago by 44k • written 15 months ago by ▴ 120
0
votes
13
replies
1.6k
views
Use bcftools isec to find denovo mutations
mutations denovo
updated 15 months ago by 44k • written 15 months ago by ▴ 120
0
votes
0
replies
453
views
Seperate males and females samples from trio.vcf
vcf shell
15 months ago by anasjamshed ▴ 120
16
votes
10
replies
2.3k
views
Unable to Create Index file of VCF
VCF
updated 15 months ago by 44k • written 15 months ago by ▴ 120
1
vote
9
replies
1.5k
views
Obtaining bcf and vcf files and use bcf tool annotate
bcftools
updated 15 months ago by 44k • written 15 months ago by ▴ 120
2
votes
6
replies
1.3k
views
Design and Contrast Matrix in Limma Analysis
R
updated 15 months ago by 4.6k • written 15 months ago by ▴ 120
0
votes
6
replies
865
views
expression of the GAT1 transport protein
protein GEO gene
updated 15 months ago by 44k • written 15 months ago by ▴ 120
10
votes
7
replies
1.4k
views
Use tximport to merge and transform the transcript counts to gene counts
RNAseq gene
updated 16 months ago by 44k • written 16 months ago by ▴ 120
1
vote
12
replies
1.5k
views
Disease information from gene names
Genes Disease
17 months ago by anasjamshed ▴ 120
0
votes
5
replies
1.0k
views
Create phylogenetic tree of 144 species
phylogenetic-tree
updated 16 months ago by 44k • written 17 months ago by ▴ 120
0
votes
5
replies
1.1k
views
How to create bigwig file in galaxy after MACS procedure(Chip Seq)
ChIP-Seq Galaxy
updated 17 months ago by 44k • written 17 months ago by ▴ 120
0
votes
0
replies
355
views
Problem in visulaizing peak files in IGB(Windows)
IGB Galaxy
17 months ago by anasjamshed ▴ 120
12
votes
25
replies
2.5k
views
Transform Data into DNA picture
DNA
updated 17 months ago by 47k • written 17 months ago by ▴ 120
0
votes
3
replies
556
views
Difference between RNA Seq and Microarray
microarray RNA-seq
updated 18 months ago by 44k • written 18 months ago by ▴ 120
1
vote
3
replies
645
views
Blast Variations
blast
updated 17 months ago by 44k • written 18 months ago by ▴ 120
2
votes
2
replies
675
views
How to generate pathway analysis report for a list of proteins
python R
updated 17 months ago by 44k • written 19 months ago by ▴ 120
0
votes
0
replies
314
views
Problem in Python script of NJ
python
updated 19 months ago by 44k • written 19 months ago by ▴ 120
0
votes
2
replies
744
views
String is not accepting more than 2000 genes
python API
updated 19 months ago by 44k • written 20 months ago by ▴ 120
0
votes
0
replies
470
views
Problem in generating interactions graphs through python script
String Python
updated 19 months ago by 44k • written 20 months ago by ▴ 120
1
vote
2
replies
983
views
How to use seqkit in ubuntu wsl
Linux
updated 19 months ago by 44k • written 21 months ago by ▴ 120
124 results • Page 1 of 3
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