Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
Showing :
all
0
votes
0
replies
217
views
Comment:
Comment: How to convert Haps file to vcf file?
5 days ago by
curious
▴ 750
0
votes
5
replies
376
views
Easy way to find out which allele is minor allele from bed file?
plink
updated 11 days ago by
chrchang523
10k • written 12 days ago by
curious
▴ 750
0
votes
0
replies
376
views
Comment:
Comment: Easy way to find out which allele is minor allele from bed file?
12 days ago by
curious
▴ 750
0
votes
1
reply
376
views
Comment:
Comment: Easy way to find out which allele is minor allele from bed file?
12 days ago by
curious
▴ 750
0
votes
0
replies
238
views
Comment:
Comment: Can't figure out plink --sample-diff
5 weeks ago by
curious
▴ 750
0
votes
2
replies
238
views
Can't figure out plink --sample-diff
plink
5 weeks ago by
curious
▴ 750
0
votes
0
replies
394
views
Comment:
Comment: Why do these two variants appear to result in the same amino acid change when an
3 months ago by
curious
▴ 750
3
votes
2
replies
394
views
Why do these two variants appear to result in the same amino acid change when annotated by snpeff, but are annotated differently in clinvar
clinvar
3 months ago by
curious
▴ 750
1
vote
1
reply
304
views
Is there a way to map Medgen # to OMIM # programmatically?
medgen
omim
updated 4 months ago by
Pierre Lindenbaum
161k • written 4 months ago by
curious
▴ 750
0
votes
1
reply
414
views
Where do these snpeff annotation come from?
snpeff
updated 5 months ago by
Istvan Albert
100k • written 5 months ago by
curious
▴ 750
0
votes
4
replies
1.2k
views
Is there a way to get a list of all homogygous sites for each sample with plink (regardless if they are in a run)
plink
updated 7 months ago by
chrchang523
10k • written 8 months ago by
curious
▴ 750
0
votes
1
reply
1.2k
views
Comment:
Comment: Is there a way to get a list of all homogygous sites for each sample with plink
8 months ago by
curious
▴ 750
1
vote
1
reply
447
views
bcftools update ID keeping only string after ';'
bcftools
updated 8 months ago by
Pierre Lindenbaum
161k • written 8 months ago by
curious
▴ 750
0
votes
1
reply
636
views
Comment:
Comment: Is this a valid allele in a vcf?
9 months ago by
curious
▴ 750
0
votes
1
reply
636
views
Comment:
Comment: Is this a valid allele in a vcf?
9 months ago by
curious
▴ 750
0
votes
5
replies
636
views
Is this a valid allele in a vcf?
vcf
updated 9 months ago by
Ram
43k • written 9 months ago by
curious
▴ 750
0
votes
1
reply
676
views
Comment:
Comment: Is it possible to interpret HGVS without transcript version number?
9 months ago by
curious
▴ 750
0
votes
1
reply
676
views
Comment:
Comment: Is it possible to interpret HGVS without transcript version number?
9 months ago by
curious
▴ 750
0
votes
0
replies
394
views
Comment:
Comment: jannovar download problem
9 months ago by
curious
▴ 750
0
votes
6
replies
676
views
Is it possible to interpret HGVS without transcript version number?
hgvs
updated 9 months ago by
Zhenyu Zhang
★ 1.2k • written 9 months ago by
curious
▴ 750
0
votes
2
replies
394
views
jannovar download problem
jannovar
9 months ago by
curious
▴ 750
0
votes
0
replies
527
views
Comment:
Comment: Why does this stop gained result in a longer protein than the canonical version
10 months ago by
curious
▴ 750
2
votes
2
replies
527
views
Why does this stop gained result in a longer protein than the canonical version
ensembl
updated 10 months ago by
Ram
43k • written 10 months ago by
curious
▴ 750
2
votes
2
replies
1.5k
views
Download VCF for dbsnp 156?
dbsnp
updated 10 months ago by
GenoMax
142k • written 10 months ago by
curious
▴ 750
0
votes
1
reply
459
views
Any way to get bcftools to query up to but not including the last site given in a region query
bcftools
updated 10 months ago by
Pierre Lindenbaum
161k • written 10 months ago by
curious
▴ 750
4
votes
3
replies
1.0k
views
What does canonical transcript mean in the context of VEP
vep
updated 11 months ago by
LauferVA
4.2k • written 11 months ago by
curious
▴ 750
0
votes
0
replies
490
views
Comment:
Comment: How to check the imputation quality of genotyping files?
12 months ago by
curious
▴ 750
0
votes
0
replies
786
views
Comment:
Comment: Low SNP Overlap with Michigan 1KG and TopMed reference panel
12 months ago by
curious
▴ 750
0
votes
0
replies
703
views
Comment:
Comment: viewing hgvs in genome data viewer
12 months ago by
curious
▴ 750
0
votes
1
reply
703
views
Comment:
Comment: viewing hgvs in genome data viewer
12 months ago by
curious
▴ 750
1
vote
4
replies
703
views
viewing hgvs in genome data viewer
ncbi
hgvs
clinvar
12 months ago by
curious
▴ 750
0
votes
0
replies
311
views
Trying to understand the difference between between these two HGVS
hgvs
15 months ago by
curious
▴ 750
2
votes
2
replies
786
views
drop duplicate insertion deletions in VCF at same position while keeping one
bcftools
15 months ago by
curious
▴ 750
0
votes
0
replies
786
views
Comment:
Comment: drop duplicate insertion deletions in VCF at same position while keeping one
15 months ago by
curious
▴ 750
2
votes
1
reply
876
views
In GWAS what is the point of regressing a quantitative phenotype on covariates first and taking the residuals?
gwas
updated 16 months ago by
LChart
3.9k • written 16 months ago by
curious
▴ 750
1
vote
1
reply
499
views
calculating the allele frequency of a gene deletion and duplication
cnv
updated 16 months ago by
German.M.Demidov
★ 2.9k • written 16 months ago by
curious
▴ 750
5
votes
11
replies
2.2k
views
fast way to get last position in a large indexed VCF?
bcftools
updated 20 months ago by
Istvan Albert
100k • written 20 months ago by
curious
▴ 750
0
votes
1
reply
2.2k
views
Comment:
Comment: fast way to get last position in a large indexed VCF?
20 months ago by
curious
▴ 750
0
votes
1
reply
2.2k
views
Comment:
Comment: fast way to get last position in a large indexed VCF?
20 months ago by
curious
▴ 750
0
votes
0
replies
816
views
Comment:
Comment: is it possible to calculate MAF from DS instead of GT when using bcftools +fill-
20 months ago by
curious
▴ 750
0
votes
0
replies
816
views
Comment:
Comment: is it possible to calculate MAF from DS instead of GT when using bcftools +fill-
20 months ago by
curious
▴ 750
0
votes
3
replies
816
views
is it possible to calculate MAF from DS instead of GT when using bcftools +fill-tags?
bcftools
20 months ago by
curious
▴ 750
1
vote
0
replies
411
views
Does genomic control have a valid interpretation when there are no genome-wide significant hits
genomic
control
statistics
22 months ago by
curious
▴ 750
0
votes
0
replies
387
views
am I understanding scaled CADD scores correct?
cadd
24 months ago by
curious
▴ 750
2
votes
1
reply
505
views
Using snpsift to filter VCF by sample
snpsift
updated 2.0 years ago by
Pierre Lindenbaum
161k • written 2.0 years ago by
curious
▴ 750
0
votes
0
replies
392
views
Does larger standardized PRS value always means higher risk?
prs
2.1 years ago by
curious
▴ 750
0
votes
0
replies
1.2k
views
Comment:
Comment: grep a vcf
2.2 years ago by
curious
▴ 750
0
votes
0
replies
559
views
Converting observed heritability to liability scale, how to get standard error?
hertiability
greml
ldsc
2.2 years ago by
curious
▴ 750
0
votes
0
replies
1.1k
views
Comment:
Comment: keep samples that carry non-reference allele in list of variants snpeff/snpsift
2.3 years ago by
curious
▴ 750
0
votes
1
reply
1.1k
views
Comment:
Comment: keep samples that carry non-reference allele in list of variants snpeff/snpsift
2.3 years ago by
curious
▴ 750
299 results • Page
1 of 6
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6