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831
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Comment:
Comment: Filtering VCF based on codon-transcript
7 weeks ago by
avelarbio46
▴ 30
0
votes
1
reply
831
views
Comment:
Comment: Filtering VCF based on codon-transcript
8 weeks ago by
avelarbio46
▴ 30
0
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1
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831
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Comment:
Comment: Filtering VCF based on codon-transcript
8 weeks ago by
avelarbio46
▴ 30
0
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0
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831
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Comment:
Comment: Filtering VCF based on codon-transcript
9 weeks ago by
avelarbio46
▴ 30
0
votes
1
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831
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Comment:
Comment: Filtering VCF based on codon-transcript
9 weeks ago by
avelarbio46
▴ 30
0
votes
11
replies
831
views
Filtering VCF based on codon-transcript
vcf
bcftools
updated 7 weeks ago by
barslmn
★ 2.1k • written 9 weeks ago by
avelarbio46
▴ 30
0
votes
0
replies
205
views
Calculate mean DP4 in a multisample vcf
dp4
vcf
bcftools
updated 3 months ago by
Ram
43k • written 3 months ago by
avelarbio46
▴ 30
0
votes
1
reply
15k
views
Comment:
Comment: How to get sample names and genotype for SNP in multi-sample VCF file
7 months ago by
avelarbio46
▴ 30
0
votes
1
reply
15k
views
Comment:
Comment: How to get sample names and genotype for SNP in multi-sample VCF file
7 months ago by
avelarbio46
▴ 30
0
votes
1
reply
15k
views
Comment:
Comment: How to get sample names and genotype for SNP in multi-sample VCF file
7 months ago by
avelarbio46
▴ 30
0
votes
0
replies
310
views
Adding custom annotation to VEP output VCF
bcftools
VEP
vcf
7 months ago by
avelarbio46
▴ 30
4
votes
4
replies
658
views
Filtering VCF to divide with equal sizes
bcftools
vcf
updated 7 months ago by
Ram
43k • written 7 months ago by
avelarbio46
▴ 30
0
votes
1
reply
658
views
Answer:
Answer: Filtering VCF to divide with equal sizes
updated 7 months ago by
Ram
43k • written 7 months ago by
avelarbio46
▴ 30
0
votes
0
replies
1.6k
views
Comment:
Comment: Converting custom VCF to standard VCF
7 months ago by
avelarbio46
▴ 30
5
votes
12
replies
1.6k
views
Converting custom VCF to standard VCF
VCF
7 months ago by
avelarbio46
▴ 30
1
vote
4
replies
730
views
Finding Unique values on specific INFO field of the VCF file (dbNSFP, vep annotated multisample VCF)
bcftools
filter
vep
vcf
7 months ago by
avelarbio46
▴ 30
1
vote
0
replies
730
views
Answer:
Answer: Finding Unique values on specific INFO field of the VCF file (dbNSFP, vep annota
7 months ago by
avelarbio46
▴ 30
0
votes
0
replies
730
views
Comment:
Comment: Finding Unique values on specific INFO field of the VCF file
7 months ago by
avelarbio46
▴ 30
0
votes
1
reply
1.6k
views
Comment:
Comment: Converting custom VCF to standard VCF
7 months ago by
avelarbio46
▴ 30
0
votes
1
reply
1.6k
views
Answer:
Answer: Converting custom VCF to standard VCF
7 months ago by
avelarbio46
▴ 30
0
votes
1
reply
1.6k
views
Comment:
Comment: Converting custom VCF to standard VCF
8 months ago by
avelarbio46
▴ 30
0
votes
0
replies
1.6k
views
Comment:
Comment: Converting custom VCF to standard VCF
8 months ago by
avelarbio46
▴ 30
1
vote
3
replies
1.3k
views
Converting dbSNP VCF to work with RefSeq chromossome ID
NCBI
dbSNP
RefSeq
updated 9 months ago by
onter
▴ 170 • written 14 months ago by
avelarbio46
▴ 30
1
vote
1
reply
817
views
Filtering VCF by specific tag in INFO field
bcftools
vcf
updated 10 months ago by
Ram
43k • written 14 months ago by
avelarbio46
▴ 30
5
votes
2
replies
1.3k
views
How to create a new gene signature from RNAseq data
gene
RNAseq
signature
updated 21 months ago by
ATpoint
82k • written 21 months ago by
avelarbio46
▴ 30
0
votes
1
reply
691
views
Filtering VCF variants based on txt file with variants CHROM, POS and ID
VCF
updated 2.0 years ago by
Ram
43k • written 2.0 years ago by
avelarbio46
▴ 30
0
votes
1
reply
840
views
Running STAR-SEQR with star outputs
STAR-SEQR
STAR
fusion
RNAseq
updated 2.7 years ago by
GenoMax
142k • written 2.7 years ago by
avelarbio46
▴ 30
0
votes
1
reply
749
views
GSEA and over-representation analysis of many genes
GSEA
DE
ORA
RNAseq
updated 2.4 years ago by
bookorg
▴ 10 • written 2.7 years ago by
avelarbio46
▴ 30
1
vote
1
reply
930
views
How can I compare the similarities of two transcriptomes?
transcriptome
similarity
rnaseq
updated 2.9 years ago by
Pratik
★ 1.0k • written 2.9 years ago by
avelarbio46
▴ 30
0
votes
0
replies
1.9k
views
Comment:
Comment: Can't count features with featurecount
3.0 years ago by
avelarbio46
▴ 30
0
votes
1
reply
1.9k
views
Comment:
Comment: Can't count features with featurecount
3.1 years ago by
avelarbio46
▴ 30
0
votes
1
reply
1.9k
views
Comment:
Comment: Can't count features with featurecount
3.1 years ago by
avelarbio46
▴ 30
2
votes
6
replies
1.9k
views
Can't count features with featurecount
RNAseq
featurecounts
3.0 years ago by
avelarbio46
▴ 30
0
votes
0
replies
3.4k
views
Comment:
Comment: Bash loop for bbduk
3.1 years ago by
avelarbio46
▴ 30
9
votes
11
replies
3.4k
views
Bash loop for bbduk
bash
bbduk
updated 3.1 years ago by
cpad0112
21k • written 3.1 years ago by
avelarbio46
▴ 30
0
votes
0
replies
3.4k
views
Answer:
Answer: Bash loop for bbduk
3.1 years ago by
avelarbio46
▴ 30
0
votes
2
replies
3.4k
views
Comment:
Comment: Bash loop for bbduk
3.1 years ago by
avelarbio46
▴ 30
0
votes
0
replies
3.4k
views
Comment:
Comment: Bash loop for bbduk
3.1 years ago by
avelarbio46
▴ 30
0
votes
0
replies
3.4k
views
Comment:
Comment: Bash loop for bbduk
3.1 years ago by
avelarbio46
▴ 30
0
votes
1
reply
1.1k
views
Comment:
C: Removing batch effects
3.2 years ago by
avelarbio46
▴ 30
0
votes
3
replies
1.1k
views
Removing batch effects
batch-effect
RNA-Seq
updated 3.2 years ago by
swbarnes2
14k • written 3.2 years ago by
avelarbio46
▴ 30
0
votes
0
replies
1.4k
views
Comment:
C: STAR-fusion on galaxy
3.3 years ago by
avelarbio46
▴ 30
0
votes
1
reply
1.4k
views
Comment:
C: STAR-fusion on galaxy
3.3 years ago by
avelarbio46
▴ 30
0
votes
4
replies
1.4k
views
STAR-fusion on galaxy
Galaxy
RNA-Seq
STAR-fusion
3.3 years ago by
avelarbio46
▴ 30
0
votes
1
reply
22k
views
Comment:
C: GO analysis using topGO
3.3 years ago by
avelarbio46
▴ 30
2
votes
1
reply
660
views
Gene size correction for small RNA
small RNA
miRNA
RNA-Seq
normalization
updated 3.3 years ago by
dsull
★ 6.0k • written 3.3 years ago by
avelarbio46
▴ 30
2
votes
2
replies
1.2k
views
How to trim reads when I'm not sure where they are?
RNA-Seq
cutadapt
illumina
updated 3.3 years ago by
shelkmike
★ 1.2k • written 3.3 years ago by
avelarbio46
▴ 30
1
vote
1
reply
3.4k
views
Comment:
C: Best ubuntu version for bioinformatics?
3.4 years ago by
avelarbio46
▴ 30
25
votes
13
replies
3.4k
views
6 follow
Best ubuntu version for bioinformatics?
ubuntu
updated 3.4 years ago by
Mensur Dlakic
★ 27k • written 3.4 years ago by
avelarbio46
▴ 30
0
votes
1
reply
2.0k
views
Comment:
C: Small RNAseq Dataset to test scripts
3.4 years ago by
avelarbio46
▴ 30
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