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Answer: Answer: GG Sankey plot
2 days ago by bk11 ★ 2.5k
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0
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147
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Answer: Answer: Splitting Seurat object by sample layers
updated 6 days ago by 43k • written 7 days ago by ★ 2.5k
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0
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236
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Answer: Answer: visualize GSEA
16 days ago by bk11 ★ 2.5k
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1
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405
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Answer: Answer: Easy way to find out which allele is minor allele from bed file?
17 days ago by bk11 ★ 2.5k
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0
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197
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Answer: Answer: Download eQTL data of one specific gene for all tissues from GTEx
18 days ago by bk11 ★ 2.5k
3
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0
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290
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Answer: Answer: Seurat merge and batch correction
updated 26 days ago by 43k • written 26 days ago by ★ 2.5k
2
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1
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315
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Answer: Answer: How to filter columns in a raw sparse matrix in R
4 weeks ago by bk11 ★ 2.5k
1
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1
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538
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Answer: Answer: Rename multiple fastq.gz files
4 weeks ago by bk11 ★ 2.5k
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0
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252
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Answer: Answer: convert h5ad to rds
5 weeks ago by bk11 ★ 2.5k
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0
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234
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Answer: Answer: RNA-seq with normalized cpm count
8 weeks ago by bk11 ★ 2.5k
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1
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507
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Answer: Answer: 'Invalid parameter' error to generate a count matrix using featurecounts
8 weeks ago by bk11 ★ 2.5k
1
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1
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329
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Answer: Answer: Seurat: CreateSeuratObject error, please help
9 weeks ago by bk11 ★ 2.5k
3
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0
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581
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Answer: Answer: SHAPEIT5 phasing
10 weeks ago by bk11 ★ 2.5k
0
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1
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371
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Answer: Answer: Converting SNP data table into .traw format or qtl (R) format
3 months ago by bk11 ★ 2.5k
3
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1
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867
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Answer: Answer: ensembl - selecting SNPs of specific genes
3 months ago by bk11 ★ 2.5k
1
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0
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265
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Answer: Answer: 1000 genome project specific genes selection
3 months ago by bk11 ★ 2.5k
0
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0
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543
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Answer: Answer: reading scRNAseq .h5 file into anndata format from GEO - No clear matrix?
3 months ago by bk11 ★ 2.5k
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0
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298
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Answer: Answer: GWAS on unbalanced case-control UKB dataset using PLINK2
3 months ago by bk11 ★ 2.5k
1
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1
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466
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Answer: Answer: Merge seurat list
3 months ago by bk11 ★ 2.5k
2
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1
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546
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Answer: Answer: Splitting scRNA seq data from Multiome data(scRNA+ scATAC)
updated 3 months ago by 43k • written 3 months ago by ★ 2.5k
1
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1
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1.6k
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Answer: Answer: Issues with Merging Seurat Objects: Multiple Counts in Assays Layer
3 months ago by bk11 ★ 2.5k
1
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0
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332
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Answer: Answer: Extract information of mapped reads bam files
3 months ago by bk11 ★ 2.5k
0
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0
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298
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Answer: Answer: Obtain rsID GWAS variants (9M)
3 months ago by bk11 ★ 2.5k
2
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0
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309
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Answer: Answer: Data scaling in single-cell RNAseq - sample-wise or on the full set?
3 months ago by bk11 ★ 2.5k
1
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0
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326
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Answer: Answer: filter 1000 genome vcf file to keep common snps
4 months ago by bk11 ★ 2.5k
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0
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702
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Answer: Answer: Liftover - Picard and plink issues when performing liftover from CanFam4 to CanF
4 months ago by bk11 ★ 2.5k
1
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1
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1.2k
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Answer: Answer: How to remove the analysis slots added to my scRNA-Seq and scATAC-Seq data objec
4 months ago by bk11 ★ 2.5k
2
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0
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353
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Answer: Answer: OSCA -open .h5 file
5 months ago by bk11 ★ 2.5k
0
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1
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754
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Answer: Answer: There are several lines in Manhattan plot.
5 months ago by bk11 ★ 2.5k
0
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1
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453
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Answer: Answer: tool to find enhancer associated to gene list
5 months ago by bk11 ★ 2.5k
1
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1
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631
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Answer: Answer: How to compute Hudson's/Bhatia's FST in R OR with vcf?
5 months ago by bk11 ★ 2.5k
1
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0
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667
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Answer: Answer: Convert bed file from hg19 to GRCH38
5 months ago by bk11 ★ 2.5k
2
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2
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604
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Answer: Answer: Alternatives to snpflip to find ambigious and flipped snps
6 months ago by bk11 ★ 2.5k
2
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0
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1.7k
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Answer: Answer: keep getting error while trying to convert Seurat object into a H5ad file
6 months ago by bk11 ★ 2.5k
0
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0
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522
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Answer: Answer: Perform PCA
6 months ago by bk11 ★ 2.5k
1
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1
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918
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Answer: Answer: duplicates issues when trying to convert long to wide in R
6 months ago by bk11 ★ 2.5k
0
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0
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424
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Answer: Answer: Should I apply doublet detection for each pool seperately?
6 months ago by bk11 ★ 2.5k
1
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0
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465
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Answer: Answer: LD D-prime (D') calculation
6 months ago by bk11 ★ 2.5k
0
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0
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508
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Answer: Answer: Plink Error
6 months ago by bk11 ★ 2.5k
0
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0
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500
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Answer: Answer: XLOC gene id
6 months ago by bk11 ★ 2.5k
0
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0
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676
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Answer: Answer: PLINK Error: No valid entries in --score file
6 months ago by bk11 ★ 2.5k
1
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0
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605
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Answer: Answer: how to merge multiple files based on column header
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
3
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1
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804
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Answer: Answer: Integration Seurat different healthy samples (fresh vs frozen)
6 months ago by bk11 ★ 2.5k
0
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1
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858
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Answer: Answer: Doheatmap in seurat
6 months ago by bk11 ★ 2.5k
3
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0
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403
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Answer: Answer: How to retrieve the number of reads mapped for each chromosome in the BAM file o
6 months ago by bk11 ★ 2.5k
1
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1
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744
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Answer: Answer: FPKM values for DE analysis - Why?
6 months ago by bk11 ★ 2.5k
0
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1
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945
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Answer: Answer: How to 'organize' multiple umap/genes generates with Seurat `FeaturePlot`in a sp
6 months ago by bk11 ★ 2.5k
1
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1
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554
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Answer: Answer: How do I remove duplicate SNPs in PLINK from more than 1 data set?
6 months ago by bk11 ★ 2.5k
4
votes
0
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755
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Answer: Answer: Annoate complex heatmap columns
6 months ago by bk11 ★ 2.5k
0
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0
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565
views
Answer: Answer: What do HAP A1 and HAP A2 mean in plink --freqx output?
7 months ago by bk11 ★ 2.5k
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