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3
votes
3
replies
333
views
Is it possible to bulk download files from GEO repository?
RNA-seq Galaxy Tanscriptomics
updated 9 days ago by ▴ 580 • written 10 days ago by ▴ 760
6
votes
5
replies
406
views
How to find gene ids for Pfam ids?
Pfam Gene
7 weeks ago by WUSCHEL ▴ 760
4
votes
1
reply
290
views
What does PCA really tells about Biological data?
techniques reduction Dimension PCA
updated 12 weeks ago by 8.4k • written 12 weeks ago by ▴ 760
5
votes
2
replies
526
views
What are the methods to correlate/study metabolomics data to proteomics data?
metabolomics proteomics multiomics
updated 5 months ago by 4.2k • written 5 months ago by ▴ 760
0
votes
0
replies
251
views
Is there any s/w that can be used to map metabolite results to it's pathway/s?
R metabolomics proteomics Python
5 months ago by WUSCHEL ▴ 760
5
votes
2
replies
600
views
How to get a list of genes information for a pathway?
pathway
updated 13 months ago by 82k • written 13 months ago by ▴ 760
6
votes
3
replies
903
views
How to extract FASTA headers in R
r
updated 14 months ago by 43k • written 14 months ago by ▴ 760
6
votes
1
reply
608
views
Plotting 3 Y axis vs x
r ggplot2
updated 14 months ago by 4.6k • written 14 months ago by ▴ 760
3
votes
3
replies
1.1k
views
How to select data from assays list in SummarizedExperiment to plot
r bioconductor DEP SummarizedExperiment
15 months ago by WUSCHEL ▴ 760
3
votes
3
replies
893
views
Creating Gene ID and Gene name colum from FASTA IDs
programming r data FASTA
updated 15 months ago by ★ 2.1k • written 15 months ago by ▴ 760
7
votes
3
replies
1.2k
views
How to download whole proteome FASTA file from uniprot?
uniprot FASTA proteome
updated 16 months ago by ★ 2.4k • written 16 months ago by ▴ 760
8
votes
9
replies
1.5k
views
With your experience, what would you recommend to a wet lab, non-programmers how to learn python?
Python
updated 22 months ago by ★ 2.0k • written 22 months ago by ▴ 760
6
votes
4
replies
1.1k
views
RNASeq Analysis — Galaxy Australia
Galaxy_Australia RNASeq
updated 15 months ago by 43k • written 2.4 years ago by ▴ 760
4
votes
4
replies
1.1k
views
How to find a list homologous genes from different species?
RNA-Seq R Proteomics
updated 15 months ago by 43k • written 2.4 years ago by ▴ 760
4
votes
2
replies
1.1k
views
How much sequence similarity should be there for the classification as isoforms, redundancy, ortholog, paralog , divergence , convergence?
Evolution Protein Gene Genetics
updated 15 months ago by 43k • written 2.5 years ago by ▴ 760
4
votes
2
replies
1.1k
views
Ubuntu on Windows 10 - using Command line
Commandline Linux Git Ubuntu
2.7 years ago by WUSCHEL ▴ 760
6
votes
2
replies
3.4k
views
In Gene ontology and KEGG analysis, What is the biological definition of p-value and (-) log10(FDR) value?
RNA-Seq genome next-gen gene
updated 3.9 years ago by ★ 16k • written 3.9 years ago by ▴ 760
3
votes
2
replies
705
views
How could I compare two Gene interaction Networks?
rna-seq genome gene
4.0 years ago by WUSCHEL ▴ 760
4
votes
2
replies
8.1k
views
What is the meaning of (-) log10(FDR) value, How to compare higher negative value to lower negative value?
RNA-Seq genome gene R
updated 4.1 years ago by 100k • written 4.1 years ago by ▴ 760
2
votes
4
replies
1.5k
views
bioconductor expressionset, summarizedexperiment
RNA-Seq R genome bioconductor
4.2 years ago by WUSCHEL ▴ 760
8
votes
5
replies
1.8k
views
Gene Ontology enrichment analysis of biological processes for up- and down-regulated genes?
RNA-Seq R r rna-seq
updated 4.3 years ago by ★ 2.6k • written 4.3 years ago by ▴ 760
11
votes
3
replies
9.6k
views
How to get the list of common genes from a VennDiagram?
RNA-Seq R
updated 4.3 years ago by ★ 1.3k • written 4.3 years ago by ▴ 760
11
votes
5
replies
9.0k
views
How to create a Venn Diagram from data frame and get the list of common Genes for combination?
RNA-Seq R
updated 4.5 years ago by ★ 6.0k • written 4.5 years ago by ▴ 760
2
votes
4
replies
1.2k
views
Mutant Transcript is higher than the WT. What may be the reason?
RNA-Seq rna-seq assembly alignment Kallisto
4.5 years ago by WUSCHEL ▴ 760
10
votes
10
replies
3.6k
views
What is the difference between deferentially expressed genes and deferentially expressed transcripts?
RNA-Seq next-gen assembly alignment
updated 3.0 years ago by ▴ 510 • written 4.5 years ago by ▴ 760
20
votes
10
replies
17k
views
Could you please explain Fold change, % of change, and log2 fold change (L2FC) to a layment?
gene RNA-Seq next-gen fold-change
updated 7 months ago by 43k • written 4.5 years ago by ▴ 760
3
votes
5
replies
1.1k
views
How to map RNASeq data to reference genome to check T-DNA insertions?
RNA-Seq genome gene alignment Kallisto
4.6 years ago by WUSCHEL ▴ 760
132
votes
19
replies
31k
views
9 follow
Could you explain the difference between STAR, KALLISTO, SALMON etc. to experimental Biologist/non-bioinformatician
RNA-Seq alignment next-gen R assembly
updated 3 months ago by 43k • written 4.6 years ago by ▴ 760
0
votes
0
replies
780
views
How to download function of list of genes from Uniprot, Pathways from KEGG, and Intereactomes ?
RNA-Seq gene
4.6 years ago by WUSCHEL ▴ 760
15
votes
9
replies
15k
views
How to get the order of clustered genes of heatmap.2 to a .csv file?
RNA-Seq R
updated 4.7 years ago by 87k • written 4.7 years ago by ▴ 760
1
vote
2
replies
1.1k
views
Metabolic pathway Mapping
RNA-Seq genome pathway metabolic
4.7 years ago by WUSCHEL ▴ 760
2
votes
6
replies
7.5k
views
Python Help: Plots are not appearing in the Spyder Console
Python Omics
4.7 years ago by WUSCHEL ▴ 760
2
votes
2
replies
841
views
Why there is a difference in Kallisto o/p vs FASTQC o/p?
RNA-Seq rna-seq
4.7 years ago by WUSCHEL ▴ 760
8
votes
7
replies
1.6k
views
How to tidy data with more-than one header, while both headers in long format
gene R
updated 4.7 years ago by 20 • written 5.5 years ago by ▴ 760
11
votes
2
replies
1.5k
views
Concept behind p-value correction?
RNA-Seq protemics genome R
4.7 years ago by WUSCHEL ▴ 760
1
vote
0
replies
665
views
Downloading Arabidopsis thaliana genome (AGIs) functional bins?
RNA-Seq genome proteomics
4.8 years ago by WUSCHEL ▴ 760
3
votes
10
replies
1.6k
views
Error: se does not inherit from class SummarizedExperiment
R SummarizedExperiment
4.8 years ago by WUSCHEL ▴ 760
1
vote
1
reply
1.5k
views
Dealing with missing values: By looking at Density distribution curves can I decide best data imputation method for missing omics data?
RNA-Seq gene proteomics R
4.8 years ago by WUSCHEL ▴ 760
0
votes
0
replies
999
views
Where can I find Plant Transcriptomics / RNA-Seq lecture notes?
rna-seq gene RNA-Seq ChIP-Seq sequencing
5.0 years ago by WUSCHEL ▴ 760
2
votes
5
replies
1.9k
views
How to integrate and visualize RNASeq / Proteomics data for metabolomics pathways?
RNA-Seq R Proteomics Metabolomics
updated 5.1 years ago by ▴ 250 • written 5.1 years ago by ▴ 760
4
votes
2
replies
3.3k
views
How to export heatmap clusters to csv?
RNA-Seq R r
updated 5.1 years ago by ▴ 60 • written 5.1 years ago by ▴ 760
15
votes
4
replies
8.1k
views
% of change and log2 fold change (L2FC)?
RNA-Seq gene
5.1 years ago by WUSCHEL ▴ 760
5
votes
5
replies
1.3k
views
How to plot Volcano plots for time course experiment: Omics data?
R gene RNA-Seq Proteomics
5.2 years ago by WUSCHEL ▴ 760
15
votes
19
replies
1.8k
views
6 follow
How to create a summary statistics data table for omics data?
RNA-Seq r R statistics Proteomics
updated 5.2 years ago by ★ 2.0k • written 5.2 years ago by ▴ 760
7
votes
2
replies
1.8k
views
How to get short and sweet gene names/description for gene IDs?
RNA-Seq R proteomics
updated 5.2 years ago by 16k • written 5.2 years ago by ▴ 760
6
votes
4
replies
1.3k
views
Filtering, Summerizing, and plotting from big data frame
R RNA-Seq gene proteomics
updated 5.3 years ago by ★ 2.2k • written 5.3 years ago by ▴ 760
1
vote
5
replies
1.4k
views
What are the user friendly R packages available for analyzing shotgun proteomics data?
R proteomics mass spectrometry
5.3 years ago by WUSCHEL ▴ 760
13
votes
12
replies
14k
views
How to average replicate data using R (Column and Raw)
R gene statistics
updated 5.4 years ago by 20 • written 5.9 years ago by ▴ 760
8
votes
5
replies
2.0k
views
How to add colors to bar chart?
R
updated 5.7 years ago by ★ 2.2k • written 5.7 years ago by ▴ 760
6
votes
2
replies
3.4k
views
How to interpret PCA output statistically and biologically
gene rna-seq R
updated 5.8 years ago by 11k • written 5.8 years ago by ▴ 760
70 results • Page 1 of 2
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