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Answer:
Answer: How to parse the output file of snpEFF
20 months ago by
prasundutta87
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Answer:
Answer: EPIC array data - How to find the total number of genes in the array?
2.5 years ago by
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Answer: Variant annotation using VEP
2.6 years ago by
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605
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Answer:
Answer: calculation of gene coverage
2.6 years ago by
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2.1k
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Answer:
Answer: Extract CDS from maker gff
2.9 years ago by
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1.5k
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Answer: Given my background, what are my chances of being accepted into a PhD program at
3.0 years ago by
prasundutta87
▴ 660
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837
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Answer:
Answer: How can a mapping be performed without alignment?
3.0 years ago by
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▴ 660
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919
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Answer:
Answer: PCA plot making
3.1 years ago by
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1.7k
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Answer:
Answer: remove unmapped reads on a specific chromosome only
3.1 years ago by
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2.1k
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A: Read VEP output from command line in R
3.2 years ago by
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Answer:
A: Human Exome Variant Reference
3.3 years ago by
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3.3k
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Answer:
A: Determine the sex of a sample from a .vcf
3.3 years ago by
prasundutta87
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761
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Answer:
A: WES allelic imbalence
4.3 years ago by
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1.7k
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Answer:
A: allele specific expression (ASE) reference ratio plot query
4.9 years ago by
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2.5k
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Answer:
C: I can not run bcftools stats (help)
updated 5.2 years ago by
Ram
44k • written 5.2 years ago by
prasundutta87
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2.5k
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Answer:
A: Paired-end flag for singleton
5.5 years ago by
prasundutta87
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2.2k
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Answer:
C: no gene_id for tRNA in GFF3
5.6 years ago by
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2.6k
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Answer:
A: Is HISAT2 able to output only the best alignment?
5.6 years ago by
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1.9k
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Answer:
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5.6 years ago by
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8.8k
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Answer:
A: GATK 4 GenomeAnalysisTK still available? (Unable to access jarfile)
5.7 years ago by
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▴ 660
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4.0k
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Answer:
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5.7 years ago by
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2.4k
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Answer:
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5.7 years ago by
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14k
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Answer:
A: how to count variants par sample per chromosome in a vcf file?
5.7 years ago by
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▴ 660
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2.6k
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Answer:
A: gffread query for gff to gtf conversion
5.8 years ago by
prasundutta87
▴ 660
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0
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7.1k
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Answer:
A: How to extract reads with a known variant form a bam file
6.5 years ago by
prasundutta87
▴ 660
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4.7k
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Answer:
A: annotating strand orientation
6.5 years ago by
prasundutta87
▴ 660
1
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33k
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Answer:
Answer: extract only geneID and gene symbol from GTF file
updated 15 months ago by
Ram
44k • written 6.5 years ago by
prasundutta87
▴ 660
1
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0
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1.3k
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Answer:
C: How to find nu. of variants present in a gene for my Exome seq. sample
6.7 years ago by
prasundutta87
▴ 660
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0
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4.1k
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Answer:
A: Calculate the Quality of Bases
6.7 years ago by
prasundutta87
▴ 660
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2.7k
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Answer:
A: Mismatch and Indel rate in alignment
6.7 years ago by
prasundutta87
▴ 660
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4.4k
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Answer:
A: Keep one SNP for duplicate SNPs
6.7 years ago by
prasundutta87
▴ 660
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1
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1.7k
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Answer:
A: Molecular Docking, More Receptors, Single ligand
6.8 years ago by
prasundutta87
▴ 660
3
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5.9k
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Answer:
A: GATK ASEReadCounter: Downstream analysis for identifying allele specific express
6.8 years ago by
prasundutta87
▴ 660
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2.3k
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Answer:
A: Ligand Docking Simulation Programs
6.8 years ago by
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▴ 660
2
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1
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4.8k
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Answer:
A: Retrieving SMILES using CAS or SAMPLE ID or SAMPLE_NAME
6.8 years ago by
prasundutta87
▴ 660
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8.1k
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Answer:
A: How to get fasta sequences of features from a GFF3 file?
6.8 years ago by
prasundutta87
▴ 660
3
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0
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2.1k
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Answer:
A: SNPEFF for de novo transcriptome annotation
6.8 years ago by
prasundutta87
▴ 660
0
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2
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2.2k
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Answer:
A: difference in genotypes in a multisample vcf file
7.3 years ago by
prasundutta87
▴ 660
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