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Answer: Answer: Genotyping sites with N in reference genome
2 days ago by Pierre Lindenbaum 161k
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259
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Answer: Answer: Annotating file using bcftools
2 days ago by Pierre Lindenbaum 161k
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282
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Answer: Answer: Filtering VCF files based on VAF giving incorrect results
2 days ago by Pierre Lindenbaum 161k
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179
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Answer: Answer: Duplicated sequence samtools
4 days ago by Pierre Lindenbaum 161k
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379
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Answer: Answer: joint callset and vcf sorting, unknown TAG issue
5 days ago by Pierre Lindenbaum 161k
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234
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Answer: Answer: Failed to open VCF file
6 days ago by Pierre Lindenbaum 161k
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421
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Answer: Answer: Is it Possible to "Merge" data from Replicates within a VCF SNP File
5 days ago by Pierre Lindenbaum 161k
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535
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Answer: Answer: In IGV is this a heterogeneous mutation or false call?
7 days ago by Pierre Lindenbaum 161k
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695
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Answer: Answer: Filtering Multi-sample VCF file for all except one Genotype
7 days ago by Pierre Lindenbaum 161k
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455
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Answer: Answer: Different output for read length
8 days ago by Pierre Lindenbaum 161k
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2.9k
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Answer: Answer: How to solve the error 'ERROR::MATE_NOT_FOUND:Found xxx unpaired mates' when ru
8 days ago by Pierre Lindenbaum 161k
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232
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Answer: Answer: Nextflow: how to get the process work dir, within the process
8 days ago by Pierre Lindenbaum 161k
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299
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Answer: Answer: bcftools - reducing to "sites-only"?
8 days ago by Pierre Lindenbaum 161k
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250
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Answer: Answer: STRING-DB API can't find my protein but I can find it when I go to the STRING-DB
12 days ago by Pierre Lindenbaum 161k
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1
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765
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Answer: Answer: Create a new bed file with all pairwise combinations between two other bed files
21 days ago by Pierre Lindenbaum 161k
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418
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Answer: Answer: Why gatk VariantAnnotator required bam and coverage files
22 days ago by Pierre Lindenbaum 161k
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453
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Answer: Answer: Figures are disappeared from html report of SnpEff
22 days ago by Pierre Lindenbaum 161k
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540
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Answer: Answer: Fetch table from clinvar database according to a list of rsid
22 days ago by Pierre Lindenbaum 161k
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282
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Answer: Answer: HaplotypeCaller - only SNPs
23 days ago by Pierre Lindenbaum 161k
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319
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Answer: Answer: Difference between samtools "-f 9" and "-f 11"
24 days ago by Pierre Lindenbaum 161k
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446
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Answer: Answer: How to slice a gvcf file with tabix?
25 days ago by Pierre Lindenbaum 161k
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286
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Answer: Answer: Getting the nucleotide sequence of proteins, having their UniProt IDs
25 days ago by Pierre Lindenbaum 161k
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593
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Answer: Answer: Filtering sam or bam file with maximum matching region
27 days ago by Pierre Lindenbaum 161k
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747
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Answer: Answer: Mapping cDNA sequence of a single gene to a genome not hosted at UCSC server (wi
28 days ago by Pierre Lindenbaum 161k
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636
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Answer: Answer: Indexing the Reference Genome is not done in STAR
29 days ago by Pierre Lindenbaum 161k
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1.0k
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Answer: Answer: Questions about a bug when transferring cram file to bam file
4 weeks ago by Pierre Lindenbaum 161k
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0
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504
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Answer: Answer: Sheep reference genome remapping coordinates
4 weeks ago by Pierre Lindenbaum 161k
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1
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357
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Answer: Answer: Bwa sampe - BGI
4 weeks ago by Pierre Lindenbaum 161k
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457
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Answer: Answer: Best way to deal with overlapping read names in merged BAM files
4 weeks ago by Pierre Lindenbaum 161k
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300
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Answer: Answer: CombineGVCFs vs. MergeVcfs
4 weeks ago by Pierre Lindenbaum 161k
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269
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Answer: Answer: Problem with Sniffles pipeline and SV calling help
4 weeks ago by Pierre Lindenbaum 161k
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2
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432
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Answer: Answer: How to download large-scale cDNA sequences from NCBI effectively ?
4 weeks ago by Pierre Lindenbaum 161k
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639
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Answer: Answer: Can you suggest a protein PDB that has two chainst but only 50 total number of a
5 weeks ago by Pierre Lindenbaum 161k
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369
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Answer: Answer: Merging vcf files with bcftools ([E::get_intv] Failed to parse TBX_VCF, was wron
5 weeks ago by Pierre Lindenbaum 161k
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0
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276
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Answer: Answer: Finding variants within a subset of a BAM file
5 weeks ago by Pierre Lindenbaum 161k
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1
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501
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Answer: Answer: Downsampling long-read BAM files
5 weeks ago by Pierre Lindenbaum 161k
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0
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484
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Answer: Answer: Database or Tool: Identifying Gene Regions (Exon/Intron/UTR) from Chromosome Pos
5 weeks ago by Pierre Lindenbaum 161k
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159
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Answer: Answer: BCFTools install vcfmerge.o error
5 weeks ago by Pierre Lindenbaum 161k
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234
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Answer: Answer: small RNA creating .bam from .sam file
5 weeks ago by Pierre Lindenbaum 161k
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281
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Answer: Answer: latest dbSNP (ncbi) which genome assembly
5 weeks ago by Pierre Lindenbaum 161k
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1
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423
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Answer: Answer: How to I use prefetch (SRAtoolkit) on multiple accessions all at one?
5 weeks ago by Pierre Lindenbaum 161k
2
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2
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576
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Answer: Answer: Artificial deletion in bam
6 weeks ago by Pierre Lindenbaum 161k
2
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1
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381
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Answer: Answer: Tool to Identify Gene, Regulatory Role, and Function at Integration Sites
6 weeks ago by Pierre Lindenbaum 161k
2
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289
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Answer: Answer: filtering VCF sites and impose whatever excluded ad missing
6 weeks ago by Pierre Lindenbaum 161k
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1
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609
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Answer: Answer: frequency of each variant per sample
6 weeks ago by Pierre Lindenbaum 161k
2
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0
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408
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Answer: Answer: Problems with Nextflow to run NanoRtax Pipeline
updated 6 weeks ago by 6.4k • written 6 weeks ago by 161k
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292
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Answer: Answer: Multiple iterations of sorted bam output files with picard SortSam
6 weeks ago by Pierre Lindenbaum 161k
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0
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257
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Answer: Answer: Using nextflow for performing quality control and trimming of reads
6 weeks ago by Pierre Lindenbaum 161k
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333
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Answer: Answer: I am unsure why my files are not being accepted in bedtools jaccard, any tips?
6 weeks ago by Pierre Lindenbaum 161k
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0
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314
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Answer: Answer: BioGRID REST - How to retrieve all the protein interactions?
7 weeks ago by Pierre Lindenbaum 161k
4,703 results • Page 1 of 95
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