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Answer: Answer: Renaming fasta files with their headers
5 months ago by liorglic ★ 1.4k
2
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1
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732
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Answer: Answer: What's the acceptable threshold in Quality Assessment for Genome Assemblies?
5 months ago by liorglic ★ 1.4k
2
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1
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506
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Answer: Answer: Get support value of MRCA given a list of tip.label in R newick trees
7 months ago by liorglic ★ 1.4k
0
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1
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795
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Answer: Answer: Bacterial Pangenome Analysis
7 months ago by liorglic ★ 1.4k
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0
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1.1k
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Answer: Answer: What is the common practice to view WGS data on IGV?
8 months ago by liorglic ★ 1.4k
1
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1
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1.4k
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Answer: Answer: Filtering parasite reads from host reads
9 months ago by liorglic ★ 1.4k
1
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1
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974
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Answer: Answer: How to find the coverage of the assembled contigs of the PacBio long reads?
9 months ago by liorglic ★ 1.4k
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0
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753
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Answer: Answer: High-resolution annotation of LTR elements
14 months ago by liorglic ★ 1.4k
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1
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817
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Answer: Answer: Is there a way to test or say if one gene signature is better than another for p
16 months ago by liorglic ★ 1.4k
2
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0
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905
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Answer: Answer: Paired - end sequencing
16 months ago by liorglic ★ 1.4k
1
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1
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739
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Answer: Answer: Q matrix for phylogenetic tree reconstruction [PhyMl]
16 months ago by liorglic ★ 1.4k
3
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1
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1.3k
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Answer: Answer: Classifying repeat features from Ensembl
16 months ago by liorglic ★ 1.4k
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0
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747
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Answer: Answer: How to extract repeat element coordinates from an Ensembl genome?
updated 17 months ago by 43k • written 17 months ago by ★ 1.4k
1
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1
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1.3k
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Answer: Answer: Increased proportion of heterozygous SNPs when RNAseq reads are mapped against
updated 3 months ago by 43k • written 18 months ago by ★ 1.4k
0
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0
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1.9k
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Answer: Answer: FASTA to GTF/GFF using reference genome
18 months ago by liorglic ★ 1.4k
1
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0
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714
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Answer: Answer: Remove part of a header in a fasta file
18 months ago by liorglic ★ 1.4k
1
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0
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706
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Answer: Answer: Find mate reads in two different pair-end reads files.
18 months ago by liorglic ★ 1.4k
0
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0
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1.0k
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Answer: Answer: align kmers to reference genome
19 months ago by liorglic ★ 1.4k
2
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0
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941
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Answer: Answer: augustus gene prediction
20 months ago by liorglic ★ 1.4k
0
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1
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2.2k
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Answer: Answer: How can i find longest sequence in fasta file on terminal
20 months ago by liorglic ★ 1.4k
2
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1
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1.6k
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Answer: Answer: How to create a phylogenetic tree from 30 VCF files
2.0 years ago by liorglic ★ 1.4k
0
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1
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2.3k
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Answer: Answer: How to merge the annotation from different softwares?
2.1 years ago by liorglic ★ 1.4k
4
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0
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1.9k
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Answer: Answer: Build Phylogenetic Tree from SNPs
2.1 years ago by liorglic ★ 1.4k
1
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0
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896
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Answer: Answer: Unable to parse Open Tree of Life Newick with ete3 (python)
2.1 years ago by liorglic ★ 1.4k
3
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1
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1.8k
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Answer: Answer: What do we call a transcript?
2.2 years ago by liorglic ★ 1.4k
0
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0
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2.6k
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Answer: Answer: FastQC for paired end data
2.2 years ago by liorglic ★ 1.4k
1
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2
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1.2k
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Answer: Answer: Plant de novo genome assembly of illumina reads on linux
2.2 years ago by liorglic ★ 1.4k
0
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0
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1.7k
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Answer: Answer: Re-assembly assembled genomes
2.3 years ago by liorglic ★ 1.4k
1
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1
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854
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Answer: Answer: Bam in python
2.3 years ago by liorglic ★ 1.4k
3
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1
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1.5k
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Answer: Answer: Using snakemake to download split-reads by SRA number
2.3 years ago by liorglic ★ 1.4k
2
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1
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745
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Answer: Answer: Why should we remove recombinant regions when we construct phylogenetic tree?
2.3 years ago by liorglic ★ 1.4k
3
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1
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963
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Answer: Answer: Can I execute a snakemake rule only once?
2.3 years ago by liorglic ★ 1.4k
3
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0
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547
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Answer: Answer: SeqIO object get cleared away after being accessed
2.3 years ago by liorglic ★ 1.4k
1
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0
replies
2.6k
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Answer: Answer: Fastest way to parse through a fasta file in python
2.3 years ago by liorglic ★ 1.4k
0
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0
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526
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Answer: Answer: How to determine the best assembly with number of N in the sequence and how to f
2.3 years ago by liorglic ★ 1.4k
0
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0
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658
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Answer: Answer: Does it necessary to use both forward and reverse fastq input files in kmergnie?
2.3 years ago by liorglic ★ 1.4k
0
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0
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794
views
Answer: Answer: How extract a specific part of sequence from a gtf file?
2.3 years ago by liorglic ★ 1.4k
1
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0
replies
606
views
Answer: Answer: [Beginner] Whole Genome Sequence Assembly: Where do I start?
2.3 years ago by liorglic ★ 1.4k
1
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0
replies
844
views
Answer: Answer: How to not align reverse complementary reads?
2.3 years ago by liorglic ★ 1.4k
1
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0
replies
14k
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Answer: Answer: How to get FASTQ reads from the Short Read Archive (SRA)
2.3 years ago by liorglic ★ 1.4k
1
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0
replies
995
views
Answer: Answer: Clumpify on multiple files
2.3 years ago by liorglic ★ 1.4k
2
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1
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923
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Answer: Answer: Do I need to trim the reads on samples with <0.2% adapter content?
2.3 years ago by liorglic ★ 1.4k
0
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1
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1.1k
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Answer: Answer: Read multiple VCF files through PyVCF
2.3 years ago by liorglic ★ 1.4k
1
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1
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829
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Answer: Answer: 50% Missed exons when trying to replicate annotation reference
2.3 years ago by liorglic ★ 1.4k
1
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1
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1.3k
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Answer: Answer: Best practice for RNA-Seq aligned sequences data for visualization via IGV
2.3 years ago by liorglic ★ 1.4k
0
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0
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889
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Answer: Answer: Using Minimap2 with FMLRC2
2.4 years ago by liorglic ★ 1.4k
0
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0
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1.2k
views
Answer: Answer: Using samtools faidx with a large list of genomic loci
2.4 years ago by liorglic ★ 1.4k
1
vote
0
replies
661
views
Answer: Answer: Mapping genes from VCF by exclusively using python
2.4 years ago by liorglic ★ 1.4k
0
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0
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1.9k
views
Answer: Answer: Modern processing of VCF files in Python
2.4 years ago by liorglic ★ 1.4k
1
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2
replies
2.2k
views
Answer: Answer: file size of pair-end sequencing fastq
2.5 years ago by liorglic ★ 1.4k
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