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2
votes
2
replies
911
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Matched tumor/normal RNASeq expression counts in TCGA
tumor TCGA RNASeq expression normal
updated 18 months ago by • 0 • written 2.4 years ago by ▴ 250
3
votes
0
replies
9.3k
views
Answer: Answer: Execute commands in Bash Chunk in Rmarkdown
24 months ago by ariel ▴ 250
0
votes
0
replies
327
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What is the set of all possible GT calls for a VCF or gVCF for human data.
vcf
2.1 years ago by ariel ▴ 250
1
vote
1
reply
610
views
Tool: New VCF Header (schema) Parser---Please Break!!!
VCF header
updated 2.2 years ago by ★ 2.9k • written 2.2 years ago by ▴ 250
0
votes
1
reply
1.2k
views
Comment: Comment: How to create a new VCF 1) filtered by samples, and 2) with only selected fields
2.2 years ago by ariel ▴ 250
0
votes
7
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1.2k
views
How to create a new VCF 1) filtered by samples, and 2) with only selected fields
VCF bcftools
updated 11 months ago by 43k • written 2.2 years ago by ▴ 250
0
votes
1
reply
1.2k
views
Comment: Comment: How to create a new VCF 1) filtered by samples, and 2) with only selected fields
2.2 years ago by ariel ▴ 250
0
votes
0
replies
1.2k
views
Comment: Comment: How to create a new VCF 1) filtered by samples, and 2) with only selected fields
2.2 years ago by ariel ▴ 250
0
votes
0
replies
1.2k
views
Comment: Comment: How to create a new VCF 1) filtered by samples, and 2) with only selected fields
2.2 years ago by ariel ▴ 250
0
votes
0
replies
1.3k
views
Comment: Comment: Is there a database of bioinformatics tools & databases?
2.4 years ago by ariel ▴ 250
0
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1
reply
1.1k
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Comment: Comment: Create BED- or GVCF-type file for human genome
2.9 years ago by ariel ▴ 250
0
votes
5
replies
1.1k
views
Create BED- or GVCF-type file for human genome
GRCh37 FASTA GVCF VCF hg19
updated 2.9 years ago by 43k • written 2.9 years ago by ▴ 250
0
votes
1
reply
854
views
Buffer Error with bwa index
hg19 index bwa
updated 2.9 years ago by 161k • written 2.9 years ago by ▴ 250
4
votes
0
replies
876
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Allele Frequencies in Kaviar vs. gnomAD
gnomAD allele-frequency kaviar
3.0 years ago by ariel ▴ 250
0
votes
0
replies
1.8k
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Comment: C: ClinVar Summary vs. VCF
3.5 years ago by ariel ▴ 250
0
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0
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7.8k
views
Answer: A: Programatically retrieving CLINVAR records, with the same detail level as it is
3.5 years ago by ariel ▴ 250
0
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1
reply
1.8k
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Comment: C: ClinVar Summary vs. VCF
3.5 years ago by ariel ▴ 250
0
votes
1
reply
1.8k
views
Comment: C: ClinVar Summary vs. VCF
3.5 years ago by ariel ▴ 250
0
votes
6
replies
1.8k
views
ClinVar Summary vs. VCF
ClinVar
3.5 years ago by ariel ▴ 250
7
votes
1
reply
66k
views
Answer: A: How do I explain the difference between edgeR, LIMMA, DESeq etc. to experimental
4.5 years ago by ariel ▴ 250
0
votes
0
replies
2.3k
views
Comment: C: What is the current state-of-the-art for differential abundance in microbiome pa
4.6 years ago by ariel ▴ 250
0
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1
reply
2.3k
views
Comment: C: What is the current state-of-the-art for differential abundance in microbiome pa
4.6 years ago by ariel ▴ 250
5
votes
4
replies
2.3k
views
What is the current state-of-the-art for differential abundance in microbiome pathway analysis?
DESeq2 pathway analysis KEGG microbiome
4.6 years ago by ariel ▴ 250
1
vote
1
reply
2.9k
views
Comment: C: NOOB education needed for microbiome functional analysis (specifically PICRUSt2)
4.6 years ago by ariel ▴ 250
0
votes
1
reply
2.9k
views
Comment: C: NOOB education needed for microbiome functional analysis (specifically PICRUSt2)
4.6 years ago by ariel ▴ 250
2
votes
5
replies
2.9k
views
NOOB education needed for microbiome functional analysis (specifically PICRUSt2).
microbiome 16s functional-analysis picrust
4.6 years ago by ariel ▴ 250
2
votes
5
replies
3.5k
views
R package for Unifrac and Weighted Unifrac other than Phyloseq?
R
updated 4.7 years ago by 20 • written 4.9 years ago by ▴ 250
0
votes
0
replies
3.5k
views
Comment: C: R package for Unifrac and Weighted Unifrac other than Phyloseq?
4.9 years ago by ariel ▴ 250
0
votes
1
reply
3.5k
views
Comment: C: R package for Unifrac and Weighted Unifrac other than Phyloseq?
4.9 years ago by ariel ▴ 250
2
votes
3
replies
1.9k
views
Normalization for microbiome 16s sequence analysis.
RNA-Seq 16s microbiome MiSeq
4.9 years ago by ariel ▴ 250
2
votes
1
reply
1.9k
views
Answer: A: Normalization for microbiome 16s sequence analysis.
4.9 years ago by ariel ▴ 250
0
votes
0
replies
1.7k
views
Answer: A: How to normalize my results after DESeq2
4.9 years ago by ariel ▴ 250
0
votes
0
replies
1.7k
views
Comment: C: simple explanation needed
4.9 years ago by ariel ▴ 250
2
votes
0
replies
2.3k
views
A modern way to perform the analysis that LEfSe does?
lefse microbiome effect size LDA
5.0 years ago by ariel ▴ 250
1
vote
1
reply
2.0k
views
Comment: A: How to integrate and visualize RNASeq / Proteomics data for metabolomics pathway
5.1 years ago by ariel ▴ 250
0
votes
0
replies
31k
views
Comment: C: How is the design in DESeq2 work?
5.2 years ago by ariel ▴ 250
0
votes
0
replies
5.3k
views
Comment: A: NtSeq: JavaScript bioinformatics library for nucleotide sequence manipulation an
8.0 years ago by ariel ▴ 250
1
vote
0
replies
21k
views
Comment: C: Genotype Likelihoods
8.3 years ago by ariel ▴ 250
38 results • Page 1 of 1
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