Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
Showing :
questions
0
votes
0
replies
473
views
software and publicly available datasets for eQTLs?
eqtls
13 months ago by
User 7754
▴ 250
5
votes
19
replies
11k
views
Plot Genes In R Under A Regional Manhattan Plot
r
gene
plot
updated 4.3 years ago by
bernatgel
★ 3.4k • written 11.9 years ago by
User 7754
▴ 250
0
votes
1
reply
1.0k
views
Find region that full captures association signal
GWAS
LD
pvalue
updated 5.0 years ago by
christopher medway
▴ 460 • written 5.0 years ago by
User 7754
▴ 250
2
votes
7
replies
2.8k
views
How to compute enrichment of one feature in the other across the genome (log fold, and pvalue)
genome
enrichment
5.1 years ago by
User 7754
▴ 250
2
votes
3
replies
1.2k
views
Batch download of bed files for all transcription factors associated with a cell type
ChIP-Seq
Transcription factors
cell-type specific
updated 5.1 years ago by
ATpoint
82k • written 5.1 years ago by
User 7754
▴ 250
17
votes
31
replies
5.8k
views
Finding the best model for expression data (RNA-Seq counts)
RNA-Seq
glm
model fit
regression
updated 5.2 years ago by
i.sudbery
19k • written 5.2 years ago by
User 7754
▴ 250
0
votes
0
replies
1.2k
views
Empirical p-value after sampling matching distribution in R
R
empirical
p-value
sampling
binning
5.2 years ago by
User 7754
▴ 250
4
votes
5
replies
7.3k
views
Bedtools Error: Type checker found wrong number of fields while tokenizing data line.
bedtools
updated 5.6 years ago by
Alex Reynolds
35k • written 5.6 years ago by
User 7754
▴ 250
0
votes
0
replies
983
views
GenomicRanges based on indices or more conditions, and add column from match
genomicRanges
overlaps
R
5.6 years ago by
User 7754
▴ 250
3
votes
2
replies
2.5k
views
Get indices from GenomicRanges reduce function
GenomicRanges
reduce
R
updated 5.7 years ago by
Nicolas Rosewick
11k • written 5.7 years ago by
User 7754
▴ 250
4
votes
9
replies
2.3k
views
R reduce across multiple ranges by row
genomicranges
R
ranges
reduce
updated 5.7 years ago by
Ram
44k • written 5.7 years ago by
User 7754
▴ 250
3
votes
2
replies
999
views
R package to annotate and explore effect of biases in RNA Seq
R
RNA-Seq
annotation
updated 5.8 years ago by
h.mon
35k • written 5.8 years ago by
User 7754
▴ 250
2
votes
3
replies
1.4k
views
Understanding HiChIP data and interactions
HiChIP
updated 5.8 years ago by
Devon Ryan
104k • written 5.8 years ago by
User 7754
▴ 250
5
votes
4
replies
5.3k
views
GenomicFeatures makeTxDbFromGFF: Select by columns in gtf file
R
GenomicFeatures
updated 2.4 years ago by
Ram
44k • written 8.6 years ago by
User 7754
▴ 250
2
votes
2
replies
3.7k
views
[SOLVED] Trying to apply overlap to each row of a "GRangesList"
R
loop
apply
updated 20 months ago by
Ram
44k • written 8.7 years ago by
User 7754
▴ 250
2
votes
5
replies
3.3k
views
Convert INDEL format for use in Annovar
annovar
indel
annotation
insertion-deletion
updated 7.7 years ago by
igor
13k • written 7.7 years ago by
User 7754
▴ 250
4
votes
1
reply
2.8k
views
Is it possible to specify a reference allele while computing LD in Plink?
Plink
allele
updated 20 months ago by
Ram
44k • written 8.7 years ago by
User 7754
▴ 250
0
votes
0
replies
1.9k
views
IMPUTE2 reference allele: same as matrixEQTL?
SNP
imputation
impute2
matrixEQTL
8.0 years ago by
User 7754
▴ 250
4
votes
2
replies
3.4k
views
bedtools intersectBed and GRanges countOverlaps
R
bed
bedtools
GenomicRanges
updated 8.1 years ago by
Alex Reynolds
35k • written 8.1 years ago by
User 7754
▴ 250
0
votes
0
replies
2.6k
views
Software to run genetic association analysis between a phenotype and SNPs, conditional on the top SNP
association
SNP
phenotype
conditional analysis
8.1 years ago by
User 7754
▴ 250
1
vote
5
replies
4.0k
views
P-value for enrichment of ChIP-Seq peaks within a genomic annotation
ChIP-Seq
updated 21 months ago by
Ram
44k • written 8.6 years ago by
User 7754
▴ 250
0
votes
1
reply
4.2k
views
Circos or circlize plot for overlapping values/colors
circos
circlize
updated 2.3 years ago by
Ram
44k • written 9.5 years ago by
User 7754
▴ 250
2
votes
6
replies
2.4k
views
bedop: output overlap for each region in a file
overlap
BEDOP
updated 20 months ago by
Ram
44k • written 8.7 years ago by
User 7754
▴ 250
1
vote
0
replies
2.2k
views
Definition of splicing eQTLs in RNA-Seq and arrays
genome
RNA-Seq
snp
updated 15 months ago by
Ram
44k • written 9.0 years ago by
User 7754
▴ 250
2
votes
6
replies
3.2k
views
Quality control filter by genotype counts in a GWAS?
filter
gwas
updated 24 months ago by
Ram
44k • written 9.2 years ago by
User 7754
▴ 250
0
votes
0
replies
2.3k
views
Tools for alternative splicing of distant genes
SNP
RNA-Seq
alternative-splicing
updated 2.2 years ago by
Ram
44k • written 9.4 years ago by
User 7754
▴ 250
5
votes
4
replies
4.8k
views
From vcf 1000 Genomes plink readable file: is there a way to convert it all (not only one region)?
vcf
plink
1000Genomes
updated 2.2 years ago by
Ram
44k • written 9.5 years ago by
User 7754
▴ 250
0
votes
1
reply
3.3k
views
Expression Quantitative Trait Loci Analysis Using Rpkm In R
eqtl
rpkm
qc
10.3 years ago by
User 7754
▴ 250
0
votes
4
replies
2.9k
views
Combined Association Of Expression, Genetic, Clinical Phenotypes
eqtl
genetics
association
updated 12.6 years ago by
Larry_Parnell
16k • written 12.8 years ago by
User 7754
▴ 250
4
votes
8
replies
4.8k
views
Visualise Ld Plots On Whole Chromosome
linkage
mapping
next-gen
sequencing
updated 12.9 years ago by
Hitchpy
• 0 • written 12.9 years ago by
User 7754
▴ 250
30 results • Page
1 of 1
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6