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questions
7
votes
6
replies
7.2k
views
7 follow
ATAC-seq +4 -5 shift
atac-seq
updated 7 months ago by
ATpoint
82k • written 4.1 years ago by
Jingyue
▴ 70
15
votes
2
replies
1.0k
views
Pooling animal samples to a lower number of replicates vs. sequencing a subgroup of the animal
experimental-design
RNA-seq
RRBS
updated 13 months ago by
i.sudbery
19k • written 13 months ago by
Jingyue
▴ 70
0
votes
1
reply
868
views
ChIP-seq differential binding analysis tools
ChIP-Seq
Diffbind
Csaw
4.6 years ago by
Jingyue
▴ 70
0
votes
2
replies
1.8k
views
Chip-seeker heatmap around the peak centers
ChIPseeker
R
updated 4.6 years ago by
zx8754
11k • written 4.8 years ago by
Jingyue
▴ 70
0
votes
0
replies
921
views
Downstream of Csaw differential binding region
ChIP-Seq
csaw
differential binding
peaks
4.8 years ago by
Jingyue
▴ 70
1
vote
2
replies
3.5k
views
sc-WBGS library GC content, low bismark mapping rate, high CHH%
wgbs
gc content
methylation
updated 6.7 years ago by
Felix Krueger
▴ 40 • written 6.8 years ago by
Jingyue
▴ 70
0
votes
0
replies
1.1k
views
extremely small value on cuffnorm fpkm table
RNA-Seq
normalized-value
cufflinks
fpkm
updated 20 months ago by
Ram
43k • written 8.6 years ago by
Jingyue
▴ 70
1
vote
3
replies
5.0k
views
Running Cuffmerge error "duplicate/invalid 'transcript' "
RNA-Seq
software-error
updated 21 months ago by
Ram
43k • written 8.7 years ago by
Jingyue
▴ 70
0
votes
0
replies
1.4k
views
multiple mapping using tophat2
RNA-Seq
updated 2.4 years ago by
Ram
43k • written 8.8 years ago by
Jingyue
▴ 70
2
votes
4
replies
3.5k
views
cutadapt cannot work on my fastq files
sequencing
RNA-Seq
updated 2.2 years ago by
Ram
43k • written 8.8 years ago by
Jingyue
▴ 70
5
votes
1
reply
2.7k
views
Why Cuffdiff shows "no significant" expression difference in one of sample is 0 and another with a very high value?
Cufflinks
RNA-Seq
updated 17 months ago by
Ram
43k • written 8.9 years ago by
Jingyue
▴ 70
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