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Answer: Answer: DESeq2 analysis using two featureCounts generated from different studies
8 months ago by Asaf 10k
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886
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Answer: Answer: Criteria for a good heatmap
updated 9 months ago by 82k • written 9 months ago by 10k
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966
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Answer: Answer: How to best represent three biological replicates of single tissue sample?
9 months ago by Asaf 10k
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456
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Answer: Answer: Find the most similar regions of two dna sequences
10 months ago by Asaf 10k
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801
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Answer: Answer: Which KEGG Database to use for DIAMOND annotation of predicted gene coding regio
10 months ago by Asaf 10k
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391
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Answer: Answer: E. coli K-12 substr. MG1655
10 months ago by Asaf 10k
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653
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Answer: Answer: Nextflow: how to filter a channel by a list? (DLS2)
10 months ago by Asaf 10k
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1.3k
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Answer: Answer: Deseq2 questions
9 months ago by Asaf 10k
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759
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Answer: Answer: Best pipeline / resources / tools for whole genome assembly
10 months ago by Asaf 10k
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464
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Answer: Answer: bwa mem skip orientation when aligning a small subset of reads
10 months ago by Asaf 10k
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548
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Answer: Answer: DESeq2: "model matrix is not full rank"
10 months ago by Asaf 10k
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531
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Answer: Answer: Replicate
10 months ago by Asaf 10k
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729
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Answer: Answer: Using bedtools intersect with custom txt files
10 months ago by Asaf 10k
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956
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Answer: Answer: Rarefaction curve of microbiome study
10 months ago by Asaf 10k
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1.3k
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Answer: Answer: Check if blastn gene matches are of entire genes or of parts of genes
10 months ago by Asaf 10k
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489
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Answer: Answer: Putting Multiple ANOVA P-Values on Violin Plot
10 months ago by Asaf 10k
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1.1k
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Answer: Answer: OTU, ASV and Kraken2
11 months ago by Asaf 10k
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1.3k
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Answer: Answer: [Detailed Question] How to Normalize of Metagenomics Gene Abundances (with HMMs
11 months ago by Asaf 10k
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2.2k
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Answer: Answer: Most efficient way to run Diamond against a very very large database (i.e., NCBI
13 months ago by Asaf 10k
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604
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Answer: Answer: How to get a list of genes information for a pathway?
13 months ago by Asaf 10k
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435
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Answer: Answer: Database for exploring genes regulated by a given transcription factor
16 months ago by Asaf 10k
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1.3k
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Answer: Answer: bowtie2, and python script
16 months ago by Asaf 10k
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860
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Answer: Answer: What VCF file to use when using crossed mouse strains?
17 months ago by Asaf 10k
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2.5k
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Answer: Answer: Transform Data into DNA picture
17 months ago by Asaf 10k
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816
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Answer: Answer: Does anyone know how to generate a figure of the amino acid position in protein
17 months ago by Asaf 10k
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744
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Answer: Answer: Should I skip trimming, and do deseq2 directly if fastqc only shows adapters.
18 months ago by Asaf 10k
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751
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Answer: Answer: labelling selected genes in volcano plot
18 months ago by Asaf 10k
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596
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Answer: Answer: 16s sequence Identification
18 months ago by Asaf 10k
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2
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2.8k
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Answer: Answer: Why we use adjusted p-value not p-value in differential gene expression analysis
18 months ago by Asaf 10k
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411
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Answer: Answer: heat map code not working
19 months ago by Asaf 10k
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1.6k
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Answer: Answer: ViennaRNA package installation in Windows
20 months ago by Asaf 10k
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1.1k
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Answer: Answer: How to read vcf files
20 months ago by Asaf 10k
3
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2
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1.1k
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Answer: Answer: nested elements in bed file using awk
20 months ago by Asaf 10k
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753
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Answer: Answer: Bedtools loop over subfolders
20 months ago by Asaf 10k
2
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899
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Answer: Answer: how to filter fasta file?
20 months ago by Asaf 10k
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1.4k
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Answer: Answer: Does ASVs IDs from dada2 have specific taxonomic assignments?
20 months ago by Asaf 10k
2
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762
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Answer: Answer: How to find nucleoid-associated proteins in poorly described bacteria?
20 months ago by Asaf 10k
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606
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Answer: Answer: Simplest solution to generate nucleotide sequence with and without a variant (al
20 months ago by Asaf 10k
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1.3k
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Answer: Answer: BLAST, set a limit to the number of hits in output
20 months ago by Asaf 10k
3
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914
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Answer: Answer: what is the difference between QTL heritability and heritability?
20 months ago by Asaf 10k
2
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562
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Answer: Answer: Grep search question
20 months ago by Asaf 10k
2
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1
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736
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Answer: Answer: How to look at the global level of miRNA after performing DEA for miRNA-Seq dat
20 months ago by Asaf 10k
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0
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953
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Answer: Answer: How to split two rows in multiples row in R
20 months ago by Asaf 10k
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0
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855
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Answer: Answer: When a gene "fails" (ie doesn't express optimally or at all), does another gene
20 months ago by Asaf 10k
2
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1
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2.0k
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Answer: Answer: R - Heatmap for categorical variables (color by row)
21 months ago by Asaf 10k
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1
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823
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Answer: Answer: Feedback on Workflow
22 months ago by Asaf 10k
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857
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Answer: Answer: Pearson correlation matrix heat map. The different colors represent Pearson corr
22 months ago by Asaf 10k
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1
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3.2k
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Answer: Answer: OTU Table Extraction from Phyloseq Object
23 months ago by Asaf 10k
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577
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Answer: Answer: promoter analysis with DEG RNA-seq
23 months ago by Asaf 10k
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1
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981
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Answer: Answer: Differences between the application of function end-to-end and local in Bowtie2
23 months ago by Asaf 10k
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