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Showing :
answers
3
votes
1
reply
4.3k
views
Answer:
A: perl script for multifasta sequence analysis
updated 3.8 years ago by
Ram
43k • written 9.1 years ago by
thackl
★ 3.0k
2
votes
0
replies
12k
views
Answer:
A: Generate consensus from BAM file
updated 4.2 years ago by
h.mon
35k • written 9.3 years ago by
thackl
★ 3.0k
1
vote
1
reply
3.2k
views
Answer:
A: Crazy coverage in assembly of chloroplast
updated 4.5 years ago by
Ram
43k • written 8.5 years ago by
thackl
★ 3.0k
1
vote
0
replies
3.3k
views
Answer:
A: Software or PERL code to erase non-orthologous proteins in FASTA file based on O
updated 4.5 years ago by
Ram
43k • written 8.6 years ago by
thackl
★ 3.0k
0
votes
0
replies
3.1k
views
Answer:
A: Assemble short reads based on k-mers
updated 4.5 years ago by
Ram
43k • written 8.8 years ago by
thackl
★ 3.0k
2
votes
1
reply
5.1k
views
Answer:
A: R ggtree adding metadata based on tree structure
4.6 years ago by
thackl
★ 3.0k
3
votes
1
reply
6.2k
views
Answer:
A: Get BUSCO gene descriptions
4.8 years ago by
thackl
★ 3.0k
1
vote
2
replies
1.6k
views
Answer:
A: retrieve multiple bacterial genes and flanking regions
4.9 years ago by
thackl
★ 3.0k
0
votes
0
replies
4.6k
views
Answer:
A: Calculate CG content in a fastq file
5.5 years ago by
thackl
★ 3.0k
0
votes
2
replies
2.7k
views
Answer:
A: Printable visualizations of large-scale alignments
5.5 years ago by
thackl
★ 3.0k
1
vote
0
replies
3.9k
views
Answer:
A: Merging all sequences with identical ID's
5.5 years ago by
thackl
★ 3.0k
0
votes
1
reply
4.5k
views
Answer:
A: error for barplot in enrichGO(clusterProfiler)
5.7 years ago by
thackl
★ 3.0k
0
votes
0
replies
11k
views
Answer:
A: Bimodal GC content
6.6 years ago by
thackl
★ 3.0k
3
votes
0
replies
2.0k
views
Answer:
Answer: How can we use a read simulator to generate paired-end data with uneven coverage
updated 23 months ago by
Ram
43k • written 9.2 years ago by
thackl
★ 3.0k
0
votes
0
replies
1.4k
views
Answer:
A: Is there a term for a genome assembly that is not closed?
7.6 years ago by
thackl
★ 3.0k
0
votes
1
reply
2.4k
views
Answer:
A: ALLPATHS-LG slow ... multi threads possible ?
7.7 years ago by
thackl
★ 3.0k
2
votes
0
replies
1.7k
views
Answer:
A: Confusion about the term genome coverage
7.8 years ago by
thackl
★ 3.0k
0
votes
0
replies
5.2k
views
Answer:
A: Extracting reads mapped to any of multiple references
7.9 years ago by
thackl
★ 3.0k
0
votes
1
reply
3.8k
views
Answer:
A: Salmon/Sailfish for repeat element quantification?
8.1 years ago by
thackl
★ 3.0k
2
votes
1
reply
3.0k
views
Answer:
A: Downloading rice chloroplast genome
8.2 years ago by
thackl
★ 3.0k
0
votes
0
replies
2.2k
views
Answer:
Answer: regex dont match why??
updated 22 months ago by
Ram
43k • written 8.3 years ago by
thackl
★ 3.0k
0
votes
1
reply
3.8k
views
Answer:
A: What is "Total Length" in QUAST?
8.3 years ago by
thackl
★ 3.0k
3
votes
1
reply
11k
views
Answer:
A: Bimodal GC content
8.3 years ago by
thackl
★ 3.0k
0
votes
1
reply
3.5k
views
Answer:
A: PacBio sequences, proovread correction with Illumina HiSeq reads
8.4 years ago by
thackl
★ 3.0k
5
votes
2
replies
7.9k
views
Answer:
A: de novo sequence assembly with extremely high coverage
8.5 years ago by
thackl
★ 3.0k
2
votes
0
replies
1.6k
views
Answer:
A: How Can I perform a multiple alignment with characters?
8.5 years ago by
thackl
★ 3.0k
3
votes
1
reply
4.5k
views
Answer:
A: IGV view of bam
8.5 years ago by
thackl
★ 3.0k
1
vote
1
reply
2.6k
views
Answer:
A: QUAST alignment contig retrieval
8.6 years ago by
thackl
★ 3.0k
3
votes
2
replies
3.3k
views
Answer:
A: Perl script for reformatting a plink/seq output file
8.6 years ago by
thackl
★ 3.0k
0
votes
0
replies
2.0k
views
Answer:
A: bacterial genome annotation for rna seq analysis
8.6 years ago by
thackl
★ 3.0k
0
votes
0
replies
1.7k
views
Answer:
A: Removed contigs and genes from assembly by HaploMerger
8.6 years ago by
thackl
★ 3.0k
2
votes
1
reply
7.3k
views
Answer:
A: Average coverage of de novo SPAdes assembly deviates a lot from theretical cover
8.6 years ago by
thackl
★ 3.0k
4
votes
1
reply
4.7k
views
Answer:
A: coverage bed error but produces output file
8.6 years ago by
thackl
★ 3.0k
6
votes
1
reply
2.4k
views
Answer:
A: Illumina PE - what are causes for coverage drops?
8.6 years ago by
thackl
★ 3.0k
2
votes
0
replies
5.1k
views
Answer:
A: Extracting specific sequences from a big fasta file using ids of the sequences t
8.6 years ago by
thackl
★ 3.0k
1
vote
0
replies
6.9k
views
Answer:
A: How to plot length distribution of contigs in the assembly?
8.7 years ago by
thackl
★ 3.0k
0
votes
0
replies
3.9k
views
Answer:
A: Tool for PacBio Denovo assembly of diploid plant genome (size 500mb) having aro
8.7 years ago by
thackl
★ 3.0k
0
votes
0
replies
3.3k
views
Answer:
A: Samtools view pipe and position
8.7 years ago by
thackl
★ 3.0k
4
votes
1
reply
1.8k
views
Answer:
Answer: how to find full mitochondrial genome of plants in gene bank?
updated 20 months ago by
Ram
43k • written 8.7 years ago by
thackl
★ 3.0k
1
vote
1
reply
2.2k
views
Answer:
Answer: What is nucleotide substitution rate (of aligned sequences)?
updated 20 months ago by
Ram
43k • written 8.7 years ago by
thackl
★ 3.0k
0
votes
1
reply
12k
views
Answer:
A: Bowtie2 Alignment summary
8.7 years ago by
thackl
★ 3.0k
1
vote
1
reply
2.4k
views
Answer:
A: What Quality Control software should i use?
8.7 years ago by
thackl
★ 3.0k
3
votes
2
replies
9.2k
views
Answer:
A: How do I compute the effective genome size?
8.7 years ago by
thackl
★ 3.0k
2
votes
3
replies
9.1k
views
Answer:
A: How to generate contigs from bam alignment
8.7 years ago by
thackl
★ 3.0k
1
vote
0
replies
15k
views
Answer:
A: How Does Assembled Contigs Get Mapped To A Chromosome?
8.8 years ago by
thackl
★ 3.0k
1
vote
1
reply
9.1k
views
Answer:
Answer: How to generate contigs from bam alignment
updated 19 months ago by
Ram
43k • written 8.8 years ago by
thackl
★ 3.0k
0
votes
0
replies
5.1k
views
Answer:
Answer: How To Adjust Bwa Mem To Allow For Longer Gaps In Contig Alignment
updated 19 months ago by
Ram
43k • written 8.8 years ago by
thackl
★ 3.0k
2
votes
1
reply
8.5k
views
Answer:
Answer: Randomize order of sequences in a fasta file
updated 19 months ago by
Ram
43k • written 8.8 years ago by
thackl
★ 3.0k
0
votes
1
reply
3.0k
views
Answer:
A: unalign bam and convert to fastq
8.8 years ago by
thackl
★ 3.0k
3
votes
1
reply
3.6k
views
Answer:
Answer: Perl : String comparison problem
updated 19 months ago by
Ram
43k • written 8.8 years ago by
thackl
★ 3.0k
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